Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq387 408 7e-112 seq172 358 1e-96 seq381 316 3e-84 seq3 309 5e-82 >seq387 Length=12500 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 1357 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1299 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1298 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1239 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1179 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1178 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1119 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| || || |||||||||||||||||||| |||||| |||| |||||| Sbjct 1118 CAAATTCCGCAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1066 >seq172 Length=36390 Score = 358 bits (396), Expect = 1e-96 Identities = 256/293 (87%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || ||||||||||||||||||||||||||| || Sbjct 21709 TACTAGGTTGAATTACTATTGCAAC-ACTATCATCAGTAGGGTAAAACTAACCTGTCCCA 21767 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||| || Sbjct 21768 CGACGGTCTAAATCCAGCTCACATTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 21827 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 21828 ATTCTGCTTCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCAACGTCGCATT 21887 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 21888 GAAGGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 21947 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | || |||||||||||||||||||| |||||| | || |||||| Sbjct 21948 CAAATTCTAAAGGTCTAAAGGATCGATAGGCCACTCTTTCACGATTCGTATTC 22000 >seq381 Length=12965 Score = 316 bits (350), Expect = 3e-84 Identities = 197/210 (94%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC----ATCAGTAGGGTAAAACTAACCTGT 56 ||||| | ||||||| |||| | | || ||| |||||||||||||||||||||||| Sbjct 320 TACTAGGTTGAATTACTATTGCGAC-ACTGTCTTCCATCAGTAGGGTAAAACTAACCTGT 378 Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 CTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 438 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 498 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||||||||||||||| Sbjct 499 CTATGAACGCTTGGCTGCCACAAGCCAGTT 528 Score = 163 bits (180), Expect = 5e-38 Identities = 94/95 (99%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 202 CAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAG 260 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7822 CAGTTAATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAG 7881 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||| Sbjct 7882 GATCGATAGGCCACACTTTCATGGTTTGTATTCAC 7916 Score = 152 bits (168), Expect = 9e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7267 CTTCCCGAATCCGCCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 7326 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||||||||||||||||||| Sbjct 7327 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 7360 >seq3 Length=24358521 Score = 309 bits (342), Expect = 5e-82 Identities = 212/238 (89%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||| ||||||||||||||||||| Sbjct 18260588 TACTAGGTTGAATTACTATTGTGAC-ACTGTCATCAGTAAAGTAAAACTAACCTGTCTCA 18260530 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || Sbjct 18260529 CGACGGTCTAAACCCAGCTCACCTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 18260470 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| Sbjct 18260469 ATTCTGCTTCACAATGATAGGGAGAGCCGACATCGAAGGATCAAAAGGCAACGTTGCTAT 18260410 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| Sbjct 18260409 GAACGCTTGGCTGCCACAAGCTAGTTATCCCTGTTGTAACTTTTCTGACACCTCTAGC 18260352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854330246784