Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq8164 230 5e-58 seq6 223 7e-56 seq44 206 6e-51 seq5 89.7 1e-15 seq3 86.0 1e-14 seq8 73.4 8e-11 >seq8164 Length=157712 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 102961 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 102904 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 102903 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 102844 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 102843 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 102784 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 102783 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 102737 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 102736 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 102680 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 102679 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 102643 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 140550 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 140607 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 140608 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 140667 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 140668 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 140727 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 140728 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 140774 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 140775 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 140831 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 140832 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 140868 >seq6 Length=21292200 Score = 223 bits (246), Expect = 7e-56 Identities = 169/197 (86%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 9460738 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 9460681 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 9460680 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 9460621 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 9460620 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 9460561 Query 182 CAACTAGCTAATCCGAC 198 ||||||||||||| ||| Sbjct 9460560 CAACTAGCTAATCAGAC 9460544 >seq44 Length=134537 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 41767 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 41824 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 41825 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 41884 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 41885 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 41944 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 41945 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 41984 >seq5 Length=26133890 Score = 89.7 bits (98), Expect = 1e-15 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || || ||||||| |||||||| | |||||||||| |||| | Sbjct 23828323 CACGCGGCATTG-CTCTGTCGGGCTTTCTCCCATTGTAGAGAATTCCCCACTACTGCATT 23828265 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 | |||||||| ||| | ||||||||||| |||||| ||||| |||| Sbjct 23828264 CGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 23828219 Score = 77.0 bits (84), Expect = 7e-12 Identities = 83/108 (77%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || || ||||||| |||||||| | ||| |||||| |||||| Sbjct 17992997 CACGCGGCATTG-CTCTGTCGGGCTTTCTCCCATTGTGGAGAATTTCCCACTACTGCCTT 17992939 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||| || ||||||||||| |||||| ||||| |||| Sbjct 17992938 TGGTAGGAGTATGAGTTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 17992893 >seq3 Length=24358521 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || | ||||||| ||||||| | |||||||||| |||||| Sbjct 3088638 CACGCGGCATTG-CTCTGTTGGGCTTTCTCCCATTGCGGAGAATTCCCCACTACTGCCTT 3088580 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 | |||||||| ||| | ||||||||||| |||||| ||||| |||| Sbjct 3088579 CGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 3088534 >seq8 Length=17249391 Score = 73.4 bits (80), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || || ||||||| || |||| | |||||||||| |||||| Sbjct 10606488 CACGCGGCATTG-CTCTGTCGGGCTTTCTCC-ATTGCGGAGAATTCCCCACTACTGCCTT 10606431 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATC 131 | |||||||| ||| | ||||||||||| ||| || ||||| Sbjct 10606430 CGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTATGGTTGATC 10606390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071912481920