Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq8164 163 5e-38 seq6 161 2e-37 seq44 132 8e-29 >seq8164 Length=157712 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 103276 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 103217 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 103216 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 103157 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 103156 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 103097 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 103096 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 103037 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 103036 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 102992 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 140235 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 140294 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 140295 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 140354 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 140355 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 140414 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 140415 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 140474 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 140475 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 140519 >seq6 Length=21292200 Score = 161 bits (178), Expect = 2e-37 Identities = 211/287 (74%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | | |||| || |||||| |||||||| | Sbjct 9461053 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCTAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 9460994 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 9460993 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 9460934 Query 126 AAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGT-TTTCACATCTGACTTGC 183 |||||| | || | ||| ||||||||||| | || ||| || | ||||| Sbjct 9460933 CTTGGTAGTTTCCACCGCCTGTCTA-GGGTTGAGCCC-TGGTATTTGACGGCGGACTTAA 9460876 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||| Sbjct 9460875 AAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTAT 9460816 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 9460815 TACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 9460769 >seq44 Length=134537 Score = 132 bits (146), Expect = 8e-29 Identities = 205/290 (71%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 41450 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 41509 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| | |||||||| ||||||||| |||||| | ||||| ||| Sbjct 41510 TCCTTCGTAGATCTTAGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 41569 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| | | ||| | | | | | ||||| | | Sbjct 41570 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCGCTTTCA-ACCC 41628 Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || ||| |||||||| ||||||||| || | | | |||| | ||| |||||| | Sbjct 41629 GA------TTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCC 41682 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 41683 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 41732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828734451244