Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq381 300 2e-79 seq387 131 2e-28 seq172 131 2e-28 seq7 122 9e-26 seq6 122 9e-26 seq2 104 2e-20 seq8 98.7 1e-18 seq3 87.8 2e-15 >seq381 Length=12965 Score = 300 bits (332), Expect = 2e-79 Identities = 182/191 (95%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12261 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 12202 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 12201 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 12143 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 12142 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 12083 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 12082 TTGGATTTATT 12072 >seq387 Length=12500 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 6406 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 6465 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 6466 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 6523 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 6524 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 6583 Query 190 T 190 | Sbjct 6584 T 6584 >seq172 Length=36390 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 25987 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 25928 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 25927 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 25870 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 25869 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 25810 Query 190 T 190 | Sbjct 25809 T 25809 >seq7 Length=17044513 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||| | ||| Sbjct 2453491 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGGATACATGAGCAT 2453432 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 | |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 2453431 GAGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 2453374 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||||||||||||| | ||||| || |||| ||||||||||||||||| || Sbjct 2453373 TTAATAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATATA 2453314 Query 190 T 190 | Sbjct 2453313 T 2453313 >seq6 Length=21292200 Score = 122 bits (134), Expect = 9e-26 Identities = 139/182 (76%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 5777667 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGGATACATTAGCAT 5777726 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATG 128 || |||| | ||| || | |||| ||||| ||| || ||| | | | |||||| Sbjct 5777727 GGGATAACATCATAAGATTT-CGGTCCTATTCTGTTAGCCTTCGGGATCAGA--GTAATG 5777783 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||||||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 5777784 ATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 5777843 Query 189 AT 190 || Sbjct 5777844 AT 5777845 >seq2 Length=42086771 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| |||||||| || | ||||| | |||||||| ||| Sbjct 26524038 CTGTTACTTTGAAGAAATTAGAGTTCTCAAAGCAAGCATATGCTCTGGATACATTAGCAT 26523979 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 | |||| | |||| | | ||| ||||| | | ||| | | ||| || ||||||| Sbjct 26523978 GTGATAACATCATAGAATTTT-GGTCCTATTATATTGGTCTTTGGGATCGGA-GTAATGA 26523921 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||| || | | |||||| || || | |||||||||||||||||||| Sbjct 26523920 TTAACAAGGAAAGTAGGAGACATTTGTATTCCATAGTGAGAGGTGAAATTCTTGGATTTA 26523861 Query 190 T 190 | Sbjct 26523860 T 26523860 >seq8 Length=17249391 Score = 98.7 bits (108), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| |||||||| | |||||| | |||| ||| |||||||||| ||||| Sbjct 326873 TTACTTTGAAGGAATTAGAGTGCTCAAAGTAAGCCTACGCTTTGAATACATTAGCATGGG 326814 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||||||| | | | ||| | |||||||| | Sbjct 326813 ATAACATCATAGGATTT-CGGTCCTATTTTGTTGCCCTTTGGGATTGAA-GTAATGATTA 326756 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | | | ||||| |||| | | ||| || || | |||||||||||||||||| Sbjct 326755 ACAGGAATAGTGAGGGGCATTTGAATTTCATAGTTAGAGGTGAAATTCTTGGATT 326701 >seq3 Length=24358521 Score = 87.8 bits (96), Expect = 2e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 59 TACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC 118 ||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| | Sbjct 201286 TACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATC 201228 Query 119 GCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAAT 178 | |||||||| || | |||||||||||| | | ||||| || |||| || |||||| Sbjct 201227 GGA-GTAATGATTAACAGGGATAGTCGGGGATATTCGTATTTCATAGTCAGAGATGAAAT 201169 Query 179 TCTTGGATTTAT 190 |||||||||||| Sbjct 201168 TCTTGGATTTAT 201157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511959506560