Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq8164 271 2e-70 seq6 223 8e-56 seq44 170 5e-40 seq3 89.7 1e-15 seq5 87.8 4e-15 seq8 78.8 2e-12 >seq8164 Length=157712 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 102961 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 102902 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 102901 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 102842 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 102841 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 102782 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 102781 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 102733 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 102732 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 102675 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 102674 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 102629 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 102628 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 102582 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 140550 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 140609 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 140610 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 140669 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 140670 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 140729 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 140730 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 140778 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 140779 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 140836 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 140837 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 140882 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 140883 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 140929 >seq6 Length=21292200 Score = 223 bits (246), Expect = 8e-56 Identities = 164/191 (86%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 9460738 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 9460679 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 9460678 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 9460619 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 9460618 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 9460559 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 9460558 ACTAGCTAATC 9460548 >seq44 Length=134537 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 41767 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 41826 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 41827 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 41886 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 41887 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 41946 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 41947 CCAACTACCTAAT 41959 >seq3 Length=24358521 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 22 TTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACT 81 |||| | | |||||||||| ||| | ||||| | ||||||| | | |||||||||| Sbjct 3088647 TTCTACCTCCACGCGGCATTGCTCTGTTGGGCTTTCTCCCATTGCGGAGAATTCCCCACT 3088588 Query 82 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 |||||| | |||||||| ||| | ||||||||||| ||||||| || || |||| Sbjct 3088587 ACTGCCTTCGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 3088534 >seq5 Length=26133890 Score = 87.8 bits (96), Expect = 4e-15 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 ||| | | |||||||||| ||| || ||||| | |||||||| | |||||||||| Sbjct 23828331 TCTACCTCCACGCGGCATTGCTCTGTCGGGCTTTCTCCCATTGTAGAGAATTCCCCACTA 23828272 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 |||| | | |||||||| ||| | ||||||||||| ||||||| || || |||| Sbjct 23828271 CTGCATTCGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 23828219 Score = 82.4 bits (90), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 ||||| | | |||||||||| ||| || ||||| | ||||||||| | ||| ||||| Sbjct 17993007 CTTCTACCTCCACGCGGCATTGCTCTGTCGGGCTTTCTCCCATTGTGGAGAATTTCCCAC 17992948 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 | |||||| |||||||| || ||||||||||| ||||||| || || |||| Sbjct 17992947 TACTGCCTTTGGTAGGAGTATGAGTTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 17992893 Score = 73.4 bits (80), Expect = 1e-10 Identities = 87/117 (74%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 ||||| | | |||||||||| ||| || ||||| | || ||| | |||||||| Sbjct 23833444 CTTCTACCTCCACGCGGCATTGCTCTGTCGGGCTTTCTCCTGTTGCAGAGAATTCCCCAT 23833385 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 | |||||| | ||||||| ||| | ||||||||||| ||||||| || || |||| Sbjct 23833384 TACTGCCTTCGTTAGGAGTATGGGCTGTGTCTCAGTT--AGTGTGGTTGATCTTCCT 23833330 >seq8 Length=17249391 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 ||||| | | |||||||||| ||| || ||||| | || |||| | | ||||||||| Sbjct 10606498 CTTCTACCTCCACGCGGCATTGCTCTGTCGGGCTTTCTCC-ATTGCGGAGAATTCCCCAC 10606440 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132 | |||||| | |||||||| ||| | ||||||||||| ||| ||| || || Sbjct 10606439 TACTGCCTTCGGTAGGAGTATGGGCTGTGTCTCAGTT--AGTATGGTTGATC 10606390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222300203264