Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq381 259 8e-67 seq387 107 3e-21 seq3 98.7 2e-18 seq172 87.8 3e-15 >seq381 Length=12965 Score = 259 bits (286), Expect = 8e-67 Identities = 230/281 (82%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 322 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 265 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 264 GGCGCGAAGCTACCGTGCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 205 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| ||| |||| | ||| |||||||||||||||||||||||||| ||||||| |||| Sbjct 204 GAAAGGGACGATTTCCCCCTACACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAAC 145 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCG--CGGAAGCGCGGGGCGCTC-AGCTGGCGGATT 237 ||||||||| ||| || ||| ||| | || | |||| || ||||| || ||| Sbjct 144 CTTAGCAGGTTGGCGACTGGC-TCCAGGTATAAATCCTGGGG---TCAAGCTGACGAATT 89 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||| ||||| |||||||||||||||||||||||| Sbjct 88 GCAATTTCACAATGCGTAGGGATAAATCCTTTGCAGACGAC 48 >seq387 Length=12500 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1355 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1412 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1413 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1472 Query 121 GAA 123 ||| Sbjct 1473 GAA 1475 >seq3 Length=24358521 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | ||||||| | ||| | ||| || |||| Sbjct 18260586 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGTCATCGCGCTCGGTTGAAAAGCCAGT 18260643 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||||||||||| |||||||||||||||||||||| | || | Sbjct 18260644 GGCGCGAAGCTACCATGAGCTGGATTATGACTGAACGCCTCTAAGTCAGAATTCGGGCTA 18260703 Query 121 GAA 123 ||| Sbjct 18260704 GAA 18260706 >seq172 Length=36390 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | || || ||| || || | Sbjct 21711 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAAT 21654 Query 61 GCCGCGAAGCTACCATCTGC---TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 | ||||||||||| | ||| ||||||||| |||||||||||||||||||||||| | Sbjct 21653 GGTGCGAAGCTACCGTTTGCCAGTGGATTATGACTGAACGCCTCTAAGTCAGAATCCTGG 21594 Query 118 CCAGAA 123 | |||| Sbjct 21593 CTAGAA 21588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819135210496