Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5054 398 1e-108 seq2977 392 5e-107 seq1026 392 5e-107 seq2945 389 6e-106 seq471 187 4e-45 seq2534 174 2e-41 >seq5054 Length=11143 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 8032 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7975 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7974 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7915 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 7914 CCCGGGCCCGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7855 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 7854 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 7795 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7794 GCCATAGTCCCTCTAA 7779 >seq2977 Length=12861 Score = 392 bits (434), Expect = 5e-107 Identities = 243/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 5525 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 5468 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5467 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 5408 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5407 CCCGGGCCCGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 5348 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | Sbjct 5347 CCCAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 5288 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 5287 GCCATAGTCCCTCTAA 5272 >seq1026 Length=119729 Score = 392 bits (434), Expect = 5e-107 Identities = 243/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 6488 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 6545 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6546 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 6605 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 6606 CCCGGGCCCGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 6665 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct 6666 CCCAGAACATCTAAGGGGATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 6725 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 6726 GCCATAGTCCCTCTAA 6741 >seq2945 Length=173978 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| | Sbjct 102086 GTACAAAGGGCAGGGGCGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTAGGAATT-C 102143 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102144 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 102203 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 102204 CCCGGGCCCGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 102263 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 102264 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 102323 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 102324 GCCATAGTCCCTCTAA 102339 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 137163 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 137220 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137221 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 137280 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||| Sbjct 137281 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATTAGTGTAGCGCGCATGCGG 137340 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | Sbjct 137341 CCCAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 137400 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 137401 GCCATAGTCCCTCTAA 137416 >seq471 Length=9362 Score = 187 bits (206), Expect = 4e-45 Identities = 202/258 (78%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| | Sbjct 3161 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 3104 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 3103 CTCGTTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 3044 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| ||||||| || | ||| || ||| | ||| ||||||||||||||| Sbjct 3043 ACCCGGACCTTTCGGCCAGGGAG---GACACGCTGATACCTTCATTGTAGCGCGCGTGCG 2987 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 2986 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 2930 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 2929 AGCCGCCTGTCCCTCTAA 2912 >seq2534 Length=3965412 Score = 174 bits (192), Expect = 2e-41 Identities = 180/233 (77%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCA-----ACGCGAGCTTGATGACTCGCGCTTACTAGGA 55 |||||||||||| ||||||||||| ||| |||| ||||| |||| || | | ||| Sbjct 257613 GTACAAAGGGCATGGACGTAGTCACTGCAACGTGAGCC-GATGAGTCGCTCTCATTGGGA 257671 Query 56 ATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA 115 ||| |||| ||||||| | || ||||||| | || |||||||||| |||||| ||| Sbjct 257672 ATT-CCTCATTGAAGATAATAAAGTGCAATGGTTTAATTCCATCACGATAAAATTTTAAA 257730 Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||| | | | |||||| || |||||||| ||||| |||| |||||| ||| | Sbjct 257731 GATTGCTTAGGCATGTCGGTTAAAACTATAGACTCATTGAACACATTAGTGTAACGCACT 257790 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| ||| |||||||| ||||||||||||||||||||| ||||| |||| Sbjct 257791 TGCGGTCCAAAACATCTATATGCATCACAGACCTGTTATTGCGTCAAATTTCC 257843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751873204575