Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq5054 125 4e-27 seq1026 125 4e-27 seq2977 120 2e-25 seq2945 107 1e-21 seq9208 71.6 8e-11 >seq5054 Length=11143 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 7502 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 7444 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 7443 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 7386 >seq1026 Length=119729 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 7018 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 7076 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||||| Sbjct 7077 TGATCCCTGGTCGGCATCGTTTATGGTTAAGACTAGGATGGTATCTGATCGTCTTCGA 7134 >seq2977 Length=12861 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 4995 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 4937 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||| ||||||||||||| Sbjct 4936 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTCGA 4879 >seq2945 Length=173978 Score = 107 bits (118), Expect = 1e-21 Identities = 97/118 (82%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| | ||||||||||| |||||| || ||| ||||| || |||||| | Sbjct 102841 GAACCCAAA-ATTTTGATTTCTCATAAGGTACC-AGCGGAGTCCTAAAAGCAACATCTGC 102898 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 102899 TGATCCCTGGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTCATCGTCTTCGA 102956 Score = 98.7 bits (108), Expect = 6e-19 Identities = 98/125 (78%), Gaps = 9/125 (7%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 137693 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 137751 Query 60 CGATCCCTAGTCG-------GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTC 112 ||||||| |||| | || ||||| |||| |||| | ||||||||||||||||| Sbjct 137752 TGATCCCTGGTCGTTGGTCGGGATTGTTTATGGTTGAGACAAGGACGGTATCTGATCGTC 137811 Query 113 TTCGA 117 ||||| Sbjct 137812 TTCGA 137816 >seq9208 Length=220 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||| ||| ||| | |||| || ||| |||| || ||| ||||| ||| || | Sbjct 83 GAACCGAAAAGCTTCGGTTTCCCGGAAGCTGCCCGCCGGGTCGTTAATGA-AACGCCGGC 141 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| |||||| |||| |||| | ||||||||||||| |||||| Sbjct 142 GGATCGCTAGCTGGCATCGTTTACAGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278354572950