Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5054 242 7e-62 seq2977 239 8e-61 seq1026 233 4e-59 seq2945 221 2e-55 seq471 176 8e-42 >seq5054 Length=11143 Score = 242 bits (268), Expect = 7e-62 Identities = 205/248 (83%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 7139 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7198 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| || ||| || |||||||| Sbjct 7199 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGAGTAATGAT 7257 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 7258 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 7317 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 7318 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 7376 Query 311 GTTAGGGG 318 ||| |||| Sbjct 7377 GTTGGGGG 7384 >seq2977 Length=12861 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 4632 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 4691 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| || ||| || |||||||| Sbjct 4692 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGAGTAATGAT 4750 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||||| | ||||| || |||||||||||||||||||||||||| Sbjct 4751 TAACAGGGACAGGCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 4810 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 4811 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 4869 Query 311 GTTAGGGG 318 ||| |||| Sbjct 4870 GTTGGGGG 4877 >seq1026 Length=119729 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 7381 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7322 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| || ||| || |||||||| Sbjct 7321 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGAGTAATGAT 7263 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| || |||||||||||||||||||||||||| Sbjct 7262 TAACAGGGACAATCGGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 7203 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 7202 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 7144 Query 311 GTTAGGGG 318 ||| |||| Sbjct 7143 GTTGGGGG 7136 >seq2945 Length=173978 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 103203 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 103144 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| || ||| || |||||||| Sbjct 103143 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGAGTAATGAT 103085 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| || || ||||||||| | |||| || ||||| |||||||||||||||||||| Sbjct 103084 TAACAGAGACAGTCGGGGGCATTCCTATTTCATAGTCAGTGGTGAAATTCTTGGATTTAT 103025 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||| | ||||| || |||||||||||||||||||||| |||||||| Sbjct 103024 GAAAGACGAACAACTACAAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 102966 Query 311 GTTAGGGG 318 ||| |||| Sbjct 102965 GTTGGGGG 102958 Score = 192 bits (212), Expect = 1e-46 Identities = 178/222 (80%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 98 TCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||| |||| |||| |||||||||||||||| |||| | |||||| | | | Sbjct 138037 TCAAAGCAAGCCTACGCTCTGAATACATTAGCATGGGATAACATCATAGGAT-TCTGATC 137979 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || || |||||| || ||| | ||||||||||| ||||| ||||||||| | || Sbjct 137978 CTGTTGTGTTGGCCTCCGGGATTGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 137919 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 || || |||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 137918 ATCTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 137859 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 137858 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 137818 >seq471 Length=9362 Score = 176 bits (194), Expect = 8e-42 Identities = 212/284 (75%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 2223 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 2282 Query 100 AAAGCAGGCCT----TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| |||| | |||||||||||| ||||||||| | |||| Sbjct 2283 CAAGCAGGCTGGATATTGCCTGAATGCTAGTGCATGGAATAATGGAATAGGACCT-CGGT 2341 Query 156 TCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||||||||| || ||| | |||||||||||| | || || |||||| | Sbjct 2342 TCTATTTTGTTGGTTTTCAGAACCAGAGGTAATGATTAATGGAGACAGGCGGGGGCATTC 2401 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||| ||||| || |||||||| Sbjct 2402 GTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCA 2461 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || || |||| ||||||||||||| || Sbjct 2462 TTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTAGAGG 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915040709440