Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3016 217 4e-54 seq1932 141 2e-31 >seq3016 Length=869763 Score = 217 bits (240), Expect = 4e-54 Identities = 294/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 736048 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 735989 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 735988 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 735929 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 735928 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 735869 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| ||||||||| || || | | ||||||||| || Sbjct 735868 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCACTGAGATCGGAAAGAACACCAACGG 735809 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 735808 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 735749 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 735748 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 735689 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 735688 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 735640 >seq1932 Length=4064500 Score = 141 bits (156), Expect = 2e-31 Identities = 275/403 (68%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 |||||||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||| Sbjct 1098186 GAATAAGCGTCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATGCAAGCGTTA 1098245 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 | ||||| | |||||||||| ||| | ||| || | | |||| | || |||||| Sbjct 1098246 TTTGGAATGATTGGGCGTAAAACGTTTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCG 1098305 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 | ||| |||| ||| || | | ||| | || |||| | || || | Sbjct 1098306 AGAGCTCAACCCTGGATAGGCGGTGGAAACTACCAAGCTGGAGTACGGCAAGGGCATAGG 1098365 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| ||||||||| || || | | |||||| || ||| || ||| Sbjct 1098366 GAATTTCCGGTGGAGCGGTGAAATGCACTGAGATCGGAAAGAACACTAACGGCAAAAGCA 1098425 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | |||| |||||||| || | || ||||| ||||||| || ||||||||| Sbjct 1098426 CTCTATTGGGCCGACACTGACACTGAGAGACAAAAGCTAGGGGAGCGAATGGGATTAGAT 1098485 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT--TGGGGATTTACTTCCTTG 368 |||| |||||| || |||| ||| | ||| || || | || ||| | || Sbjct 1098486 ACCCCAGTAGTCTTAGCTGTAAATGATGGATATTAGGCGTTATGCGCATCGACT--CGTG 1098543 Query 369 --GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||| ||||||| | |||| ||||||||||| ||| Sbjct 1098544 CAGTGCTGTAACTAACGCATTAAGTATCCCGCCTGGGGAGTAC 1098586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289375545120