Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2500 77.0 5e-12 seq2507 75.2 2e-11 seq1132 73.4 5e-11 >seq2500 Length=93118 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 57611 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 57669 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 57670 TGTGTTTTTGGTAAACAGTCGC 57691 >seq2507 Length=3123735 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||| Sbjct 2649954 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACT 2650012 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACC 111 ||||||||| ||||||||||||| || || |||||||| || Sbjct 2650013 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCTCC 2650058 >seq1132 Length=566722 Score = 73.4 bits (80), Expect = 5e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 151 CTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTT 210 ||||| ||||||| ||| ||||||| || |||| || | |||| | || | ||| Sbjct 261169 CTCCCAAAGTTACCAGGCTATTTTGCTGAGTTCCCTAGAGAGAGTTGTCTCGCGCCCCTA 261228 Query 211 AGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||||||||| || |||||||||||||||| |||| Sbjct 261229 AGTATTCTCTAGCTACCCACCTGTGTCGGTTTCGGGTA 261266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694282916565