Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2507 84.2 2e-14 seq2500 84.2 2e-14 seq548 80.6 3e-13 >seq2507 Length=3123735 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| ||||||||| ||| ||||| || Sbjct 2650055 GGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 2649996 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 2649995 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2649950 >seq2500 Length=93118 Score = 84.2 bits (92), Expect = 2e-14 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108 ||| || |||||||| ||||||||||| |||||||||| ||| ||||| || || Sbjct 57710 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAA 57651 Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | | |||| ||| |||||||||||| |||||||||||| || Sbjct 57650 GACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 57607 >seq548 Length=2303557 Score = 80.6 bits (88), Expect = 3e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGAC 128 ||||||||||| |||||||||| ||| ||||| || ||| | |||||||| ||| Sbjct 471963 CGACTGTTTATCAAAAACACAGGCCTCCGCAAAGCCGTAAGACCATGTATAGGGGCTGAT 471904 Query 129 GCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||| |||||||||||| || Sbjct 471903 GCCTGCCCAGTGCCGGAAGGTCAA 471880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476719606305