Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6212 158 3e-36 seq2440 141 2e-31 seq541 129 1e-27 seq3769 109 1e-21 seq1357 86.0 2e-14 seq2507 84.2 6e-14 seq2500 84.2 6e-14 seq548 80.6 7e-13 >seq6212 Length=287107 Score = 158 bits (174), Expect = 3e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 20185 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 20244 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20245 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 20304 Query 133 TTGTTACGGC 142 | |||||||| Sbjct 20305 TAGTTACGGC 20314 >seq2440 Length=3503224 Score = 141 bits (156), Expect = 2e-31 Identities = 127/159 (80%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2357040 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2357099 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAGC 182 || |||| |||| | || |||| ||| ||||||||||| | | |||| | | || Sbjct 2357100 CCATTATAGTTATGATCGTCGTTCACCTGGGCTTCGATCGACGGCTCCCTTCTCATCAGG 2357159 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTC 221 | | | | || |||||||||||| |||||||||| Sbjct 2357160 TCATCAACTTCCTTGACCTTCCGGCACTAGGCAGGCGTC 2357198 >seq541 Length=235885 Score = 129 bits (142), Expect = 1e-27 Identities = 154/207 (74%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| || |||| ||| ||||||||||||||||| |||||| ||||||||||| Sbjct 46385 ATCGTTACGCCTTTTGTGCGGGTTGGAACTTACCCGACAAGAAATTTCCCTACCTTAGGA 46444 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC-AAGAGCTTCGCGTTAGCTAA 185 | ||||| ||||| | | ||| ||||||||||||||| || | ||| | | | Sbjct 46445 CTGTTATAGTTACAGTCTTCGTCCACCGGGGCTTCGATCGTCGACTCCCTCGTCA--TCA 46502 Query 186 CCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||| || |||||||| ||| ||||| |||||| ||| |||| | ||| Sbjct 46503 GGTCATCAACTTCCTTGACCTTCCGACACAGGGCAAGCGTCAGCCCCCATACATGGTCTT 46562 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTA 267 || ||||| || ||||| ||||| Sbjct 46563 ACGACTTTGCGGAAACCTGTGGTTTTA 46589 >seq3769 Length=582136 Score = 109 bits (120), Expect = 1e-21 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 || |||||||||| || | ||| ||| ||||||| ||||| ||| |||| Sbjct 411241 CTACATCTTCACAAACATATTTATTCCACCGAGTCTCTCTCCAGGACAGTGCCCAAATCG 411300 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||| | ||||||| | || ||||||||||||||||||||||| ||| ||||||| || Sbjct 411301 TTACGTCTTTCGTGCTGATCAGAACTTACCCGACAAGGAATTTCACTAGCTTAGGATTGT 411360 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGC 158 || |||||||||||| || | ||||| Sbjct 411361 CATAGTTACGGCCGCCATTCGCTGGGGC 411388 >seq1357 Length=1497429 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 |||||| |||||||| |||| || ||| ||||||| ||| || |||| ||| | Sbjct 884499 ATTTCATTGAGTCTCTCTCCGAGATAGTGCCCGGATCGTTATGCCTTTTGTGCGAGTCAG 884558 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCC 143 | |||||| || || ||||| |||||||||||||| ||||| ||||||||| Sbjct 884559 A-CTTACCTGATAATGAATT-CGCTACCTTAGGACTGTTATAGTTACGGCC 884607 >seq2507 Length=3123735 Score = 84.2 bits (92), Expect = 6e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 2649950 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 2650009 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||| ||||||||||| |||||||| || ||||| Sbjct 2650010 ACTTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACC 2650055 >seq2500 Length=93118 Score = 84.2 bits (92), Expect = 6e-14 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 57607 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 57666 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 |||||||||| ||||||||||| |||||||| || ||| Sbjct 57667 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGA 57710 >seq548 Length=2303557 Score = 80.6 bits (88), Expect = 7e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||| ||| |||||||| | ||| || ||||| ||| Sbjct 471880 TTGACCTTCCGGCACTGGGCAGGCATCAGCCCCTATACATGGTCTTACGGCTTTGCGGAG 471939 Query 255 TGCTGTGTTTTTAATAAACAGTCG 278 |||||||||| ||||||||||| Sbjct 471940 GCCTGTGTTTTTGATAAACAGTCG 471963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260580557760