Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq471 102 4e-20 seq12781 89.7 2e-16 seq15242 73.4 2e-11 seq5054 73.4 2e-11 seq2977 73.4 2e-11 seq2945 73.4 2e-11 seq1026 73.4 2e-11 >seq471 Length=9362 Score = 102 bits (112), Expect = 4e-20 Identities = 85/102 (83%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||| Sbjct 4637 GGAAAAGAAACTAACAAGGATTCCCCTAGTAGCGGCGAGCGAACAGGGAAGAGCCCAGCG 4696 Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 | |||| ||||| || || | | |||||| |||| |||| Sbjct 4697 CTGAATCCCCCGGGCCTCGCTCG---GCGGGAAATGTAGCGT 4735 >seq12781 Length=270 Score = 89.7 bits (98), Expect = 2e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 10 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 68 >seq15242 Length=393 Score = 73.4 bits (80), Expect = 2e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAA 50 ||||||||||||||| |||||||||| |||||||||||| |||| ||||| Sbjct 50 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAA 1 >seq5054 Length=11143 Score = 73.4 bits (80), Expect = 2e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||| |||| ||||| ||||| || Sbjct 8867 GGAAAAGAAACTAACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAATGCCCACCG 8926 >seq2977 Length=12861 Score = 73.4 bits (80), Expect = 2e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||| |||| ||||| ||||| || Sbjct 6359 GGAAAAGAAACTAACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAATGCCCACCG 6418 >seq2945 Length=173978 Score = 73.4 bits (80), Expect = 2e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||| |||| ||||| ||||| || Sbjct 169921 GGAAAAGAAACTAACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAATGCCCACCG 169862 Score = 73.4 bits (80), Expect = 2e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||| |||| ||||| ||||| || Sbjct 172641 GGAAAAGAAACTAACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAATGCCCACCG 172582 >seq1026 Length=119729 Score = 73.4 bits (80), Expect = 2e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||| |||| ||||| ||||| || Sbjct 5653 GGAAAAGAAACTAACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAATGCCCACCG 5594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230362405200