Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq6212 181 2e-43 seq541 168 1e-39 seq2440 167 5e-39 seq3769 138 2e-30 seq2507 125 2e-26 seq2500 122 2e-25 seq1357 104 5e-20 seq548 96.9 7e-18 seq4950 78.8 2e-12 seq2214 73.4 8e-11 >seq6212 Length=287107 Score = 181 bits (200), Expect = 2e-43 Identities = 118/130 (91%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 20185 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 20244 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20245 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 20304 Query 127 TAGTTACGGC 136 |||||||||| Sbjct 20305 TAGTTACGGC 20314 >seq541 Length=235885 Score = 168 bits (186), Expect = 1e-39 Identities = 174/221 (79%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 ||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||| Sbjct 46377 GTGCCCAGATCGTTACGCCTTTTGTGCGGGTTGGAACTTACCCGACAAGAAATTTCCCTA 46436 Query 113 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT---AAGTTCACTGCTTCG 169 ||||||||| ||||||||||| | | ||| || ||||||| || ||| | ||| Sbjct 46437 CCTTAGGACTGTTATAGTTACAGTCTTCGTCCACCGGGGCTTCGATCGTCGACTCCCTCG 46496 Query 170 --AT-TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATAC 226 || | || | || | |||| ||||||| ||| ||||| |||||||| || |||| Sbjct 46497 TCATCAGGTC-ATCA-ACTTCCTTGACCTTCCGACACAGGGCAAGCGTCAGCCCCCATAC 46554 Query 227 ATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT--GGTAA 265 || ||||| |||||| || |||||||||| |||| ||||| Sbjct 46555 ATGGTCTTACGACTTTGCGGAAACCTGTGGTTTTAGGGTAA 46595 >seq2440 Length=3503224 Score = 167 bits (184), Expect = 5e-39 Identities = 167/215 (78%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2357032 GTACCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 2357091 Query 113 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT 172 |||||||||| ||||||||| | || |||| || |||||| | || ||| | | Sbjct 2357092 CCTTAGGACCATTATAGTTATGATCGTCGTTCACCTGGGCTTCGATCGACGGCTCC--CT 2357149 Query 173 GCTCTAACAGATC-------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATA 225 ||| | ||| || |||| ||||||| |||| |||||||||| || || ||| Sbjct 2357150 TCTC-ATCAGGTCATCAACTTCCTTGACCTTCCGGCACTAGGCAGGCGTCGGCCCCCATA 2357208 Query 226 CATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT 260 || ||||| | |||| || | |||| ||||||| Sbjct 2357209 GATGGTCTTACAACTTTGCGAAGACCTATGTTTTT 2357243 >seq3769 Length=582136 Score = 138 bits (152), Expect = 2e-30 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||| |||||||||| | ||||||||||||||||||||| ||||||||| | || | Sbjct 411263 ATTCCACCGAGTCTCTCTCCAGGACAGTGCCCAAATCGTTACGTCTTTCGTGCTGATCAG 411322 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||||||||||||||||||| ||| ||||||| || ||||||||||||||| || | Sbjct 411323 AACTTACCCGACAAGGAATTTCACTAGCTTAGGATTGTCATAGTTACGGCCGCCATTCGC 411382 Query 147 TGGGGC 152 |||||| Sbjct 411383 TGGGGC 411388 >seq2507 Length=3123735 Score = 125 bits (138), Expect = 2e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 2649948 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 2650007 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT 295 | || ||||||||||||||||||||||| |||||| || ||||| ||| Sbjct 2650008 AGACTTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCT 2650056 >seq2500 Length=93118 Score = 122 bits (134), Expect = 2e-25 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 57605 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 57664 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291 | ||||||||||||||||||||||||| |||||| || ||||| Sbjct 57665 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 57709 >seq1357 Length=1497429 Score = 104 bits (114), Expect = 5e-20 Identities = 91/111 (82%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||| |||||| | |||| ||||||| ||||||| |||||| ||||| ||| | Sbjct 884499 ATTTCATTGAGTCTCTCTCCGAGATAGTGCCCGGATCGTTATGCCTTTTGTGCGAGTCAG 884558 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCC 137 | |||||| || || ||||| |||||||||||||| ||||||||||||||| Sbjct 884559 A-CTTACCTGATAATGAATT-CGCTACCTTAGGACTGTTATAGTTACGGCC 884607 >seq548 Length=2303557 Score = 96.9 bits (106), Expect = 7e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 || ||||||| |||| |||||||| ||||| ||||||||| ||||| || ||| || || Sbjct 471880 TTGACCTTCCGGCACTGGGCAGGCATCAGCCCCTATACATGGTCTTACGGCTTTGCGGAG 471939 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 |||||||||||| |||||||||| |||||| Sbjct 471940 GCCTGTGTTTTTGATAAACAGTCGGCCGGGCCT 471972 >seq4950 Length=2340596 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 45 TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAA 104 |||||| ||||||||||| |||| ||||||||||||||||||| ||| ||| | |||||| Sbjct 624681 TTGAGATAGTGCCCAAATTGTTATGCCTTTCGTGCGGGTCGGACCTTGCCCAATAAGGAA 624740 Query 105 TTTCGC 110 || || Sbjct 624741 CTTTGC 624746 >seq2214 Length=9977371 Score = 73.4 bits (80), Expect = 8e-11 Identities = 50/54 (93%), Gaps = 2/54 (4%) Strand=Plus/Minus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||| |||| |||||||||||||||||||||||| ||| |||||| Sbjct 1415818 GGAATTTCGCTAC-TTAG-ACCGTTATAGTTACGGCCGCCGTTCACTAGGGCTT 1415767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062215089280