Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3016 480 2e-133 seq4810 361 2e-97 seq6103 297 6e-78 seq1932 275 2e-71 seq5739 203 1e-49 seq5569 91.5 4e-16 seq3580 86.0 2e-14 seq4486 84.2 7e-14 seq5054 77.0 1e-11 seq2945 77.0 1e-11 seq2229 77.0 1e-11 >seq3016 Length=869763 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 735642 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 735583 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 735582 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 735523 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | |||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 735522 TTGAAAGAGAGGTGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 735465 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 735464 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 735405 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 735404 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 735345 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 735344 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 735285 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 735284 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 735225 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 735224 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 735165 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 735164 CGGTGAATTCGTTCCCG 735148 >seq4810 Length=5543293 Score = 361 bits (400), Expect = 2e-97 Identities = 331/414 (80%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 84 AAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCG 143 ||||||||||||| |||||||| | || ||||| || | |||||| | || |||| Sbjct 3546300 AAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGTGTGCC-TTCG 3546242 Query 144 GGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTT 203 || || | ||||||| ||||||| ||||||||||||||| ||| || ||||||||| Sbjct 3546241 GGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTT 3546183 Query 204 AAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAA 263 |||||||||||||||||||||||| | |||||||||| | || |||| || || || | Sbjct 3546182 AAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGA 3546123 Query 264 GTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTT 323 |||||||||||| || ||||||||||||| ||| |||||||| |||||||||||||| Sbjct 3546122 ACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTT 3546063 Query 324 ATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGT 383 ||| ||||| |||||||||||||||||| | |||||||| |||| |||||||| Sbjct 3546062 ATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGG 3546003 Query 384 CAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGA 443 ||| || ||| ||| || |||||||||||||| || |||||||||| || |||| Sbjct 3546002 TGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGA 3545943 Query 444 AGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 3545942 AGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 3545889 >seq6103 Length=2400612 Score = 297 bits (328), Expect = 6e-78 Identities = 255/314 (81%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243 ||| ||| || ||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 2000765 GTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAC 2000706 Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303 | || |||| || || || | |||||||||||| || ||||||||||||| ||| ||| Sbjct 2000705 CGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGAC 2000646 Query 304 GTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 ||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||| Sbjct 2000645 GTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAA 2000586 Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423 ||| |||| |||||||| ||| || ||| ||| || |||||||||||||| || Sbjct 2000585 GGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAG 2000526 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGG 482 |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | ||| Sbjct 2000525 GCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGG 2000466 Query 483 TGAATACGTTCCCG 496 ||||| |||||||| Sbjct 2000465 TGAATTCGTTCCCG 2000452 >seq1932 Length=4064500 Score = 275 bits (304), Expect = 2e-71 Identities = 227/274 (83%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 1098591 GCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCAGTGGAGCATGTGATTT 1098650 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 ||||||| |||| ||||||||||||||||| |||||||| | || ||||| || | Sbjct 1098651 AATTCGATGCAAAGCGAAGAACCTTACCAAGGCTTGACATGCCACGAATCCTCTTGAAAG 1098710 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 |||||| | ||||| ||| || | ||||||| ||||||||||||||||||||||| Sbjct 1098711 AGAGGTGT-GCCTTC-GGGAACGCGGACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGC 1098768 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247 ||| || ||||||||||||||||||||||||||||||||| | |||||||||| |||| Sbjct 1098769 CGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCATT 1098828 Query 248 AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAA 281 |||| || || || | ||||||||||| || Sbjct 1098829 CAGTTTGGAACCCTGAACAAACTGCCGGTGATAA 1098862 >seq5739 Length=3552604 Score = 203 bits (224), Expect = 1e-49 Identities = 186/231 (81%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||||||||||| || ||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct 294221 GACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATG 294162 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| ||||| |||||||| ||| | |||||||| |||| |||||||| | Sbjct 294161 CCCTGGGCGACACATGTGCTACA-TGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGA 294103 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || || ||| ||| || |||||||||||||| | |||||||||| || ||||||| Sbjct 294102 GCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAAGCTGCAACTCGCCTGCATGAAGC 294043 Query 447 TGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 |||||||||||||||||| | |||| ||| | |||||||| ||||||| Sbjct 294042 TGGAATCGCTAGTAATCGCCGGTCAGCCATAC-GCGGTGAATTTGTTCCCG 293993 Score = 194 bits (214), Expect = 5e-47 Identities = 161/194 (83%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48 AGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 1202882 AGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACAT 1202823 Query 108 CCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCA 167 | || ||||| || | |||||| | || |||||| || | ||||||| |||| Sbjct 1202822 GCCACGAATCCTCTTGAAAGAGAGGTGTGCC-TTCGGGA-ACGCGGATACAGGTGGTGCA 1202765 Query 168 TGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||| ||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct 1202764 TGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCAGCAACGAGCGCAACCCT 1202705 Query 228 TAAGCTTAGTTGCC 241 | | ||||||||| Sbjct 1202704 CATGTTTAGTTGCC 1202691 Score = 98.7 bits (108), Expect = 3e-18 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1300463 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1300404 Query 61 GTGGTTT 67 ||||||| Sbjct 1300403 GTGGTTT 1300397 >seq5569 Length=1709212 Score = 91.5 bits (100), Expect = 4e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 18 AACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGC 77 ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| || || Sbjct 1575736 AACTCAAAGGAATTGACAGGGGCCCGCACAAGCGGTGGTGCATGTGGTTTAATTTGATGC 1575677 Query 78 AACGC 82 || || Sbjct 1575676 AAAGC 1575672 >seq3580 Length=554 Score = 86.0 bits (94), Expect = 2e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||| ||| || ||||||||||||||||||| ||||||||||||| |||| Sbjct 267 TCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCATCGAGCGCAACCCTCGTATTTAG 208 Query 237 TTGCCATCATTAAGTTGGGCAC 258 |||||| | || |||| || || Sbjct 207 TTGCCACCGTTGAGTTTGGAAC 186 >seq4486 Length=2983615 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||| || ||||||| |||||||||||| | |||||| |||||| |||||||||||| Sbjct 886419 CTCATTTTGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATTGCTAGTAATCGTG 886478 Query 467 GATCAGCATGC 477 ||||||||||| Sbjct 886479 GATCAGCATGC 886489 >seq5054 Length=11143 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 7518 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 7576 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||| || |||| || ||| ||||||| || ||||| Sbjct 7577 TTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 7619 >seq2945 Length=173978 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 102689 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 102631 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||| || |||| || ||| ||||||| || ||||| Sbjct 102630 TTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 102588 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 137677 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 137619 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||| || |||| || ||| ||||||| || ||||| Sbjct 137618 TTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 137576 >seq2229 Length=2552774 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| | || ||| | |||| | | || ||||||||||||||| |||| Sbjct 1421925 ACAGGTGGTGCATGGCTATCTTCAACCCGTGCCTTAAGGTGTTGGGTTAAGTCCTTCAAC 1421984 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCA 242 |||| |||||| | |||||||||| Sbjct 1421985 AAGCGAAACCCTCGTGTTTAGTTGCCA 1422011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503738228800