Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20]
17,405 sequences; 296,383,220 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq5054 300 3e-79
seq2945 288 2e-75
seq1026 288 2e-75
seq2977 282 7e-74
seq471 241 2e-61
seq2534 168 1e-39
>seq5054
Length=11143
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7888 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7829
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 7828 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 7771
Query 120 CCACCAAC-CATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | || || | |||| |||||||| | ||||||||||||||| |||||
Sbjct 7770 CCGTGGAGGCGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 7711
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7710 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 7651
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 7650 AGAAAGAGCTCTCAATCTGTC 7630
>seq2945
Length=173978
Score = 288 bits (318), Expect = 2e-75
Identities = 223/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 137307 ACTCGTTGAATACATTAGTGTAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCATAGA 137366
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 137367 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 137424
Query 120 CCACCAAC-CATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | || || | |||| |||||||| | ||||||||||||||| |||||
Sbjct 137425 CCGTGGAGGCGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 137484
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137485 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 137544
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 137545 AGAAAGAGCTCTCAATCTGTC 137565
Score = 194 bits (214), Expect = 3e-47
Identities = 167/202 (83%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCA 118
||||| ||||||||||||||||| | | || |||| | ||||||||| ||||||||
Sbjct 102378 ACCTGCTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTATAAGAAGCTG 102435
Query 119 GCCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176
| | | || || | |||| |||||||| | ||||||||||||||| ||||
Sbjct 102436 GTCGTGGAGTTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGA 102495
Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 102496 ATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 102555
Query 237 AAGAAAGAGCTATCAATCTGTC 258
||||||||||| ||| ||||||
Sbjct 102556 AAGAAAGAGCTCTCAGTCTGTC 102577
Score = 147 bits (162), Expect = 3e-33
Identities = 105/117 (90%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102230 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 102289
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGC 116
|||||||||||||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct 102290 CCTGTTATTGCCTCAAACTTCC-TTGGC-CTAAGCGGCCATAGTCCCTCTAAGAAGC 102344
>seq1026
Length=119729
Score = 288 bits (318), Expect = 2e-75
Identities = 223/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 6632 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGGATCACAGA 6691
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 6692 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 6749
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| |||||||| | ||||||||||||||| |||||
Sbjct 6750 CCGTGGAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 6809
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6810 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 6869
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 6870 AGAAAGAGCTCTCAGTCTGTC 6890
>seq2977
Length=12861
Score = 282 bits (312), Expect = 7e-74
Identities = 222/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 5381 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCATAGA 5322
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 5321 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 5264
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| |||||||| | ||||||||||||||| |||||
Sbjct 5263 CCGTGGAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 5204
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5203 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 5144
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||| ||| ||| ||||||
Sbjct 5143 AGAAAGCGCTCTCAGTCTGTC 5123
>seq471
Length=9362
Score = 241 bits (266), Expect = 2e-61
Identities = 211/260 (81%), Gaps = 16/260 (6%)
Strand=Plus/Minus
Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3008 CCTTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 2949
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120
|||| || | |||| |||||| |||||||||||||| || ||
Sbjct 2948 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 2891
Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
|| ||| || || | | ||| |||||||| || |||||||||||||||| |||
Sbjct 2890 GCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAAT 2831
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2830 TAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAA 2771
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 2770 GAAAGAGCTCTCAATCTGTC 2751
>seq2534
Length=3965412
Score = 168 bits (186), Expect = 1e-39
Identities = 189/245 (77%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
|||||| ||| | ||||| ||| |||||||| ||||||||||||||||||||| ||||
Sbjct 257778 AGTGTAACGCACTTGCGGTCCAAAACATCTATATGCATCACAGACCTGTTATTGCGTCAA 257837
Query 78 ACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT-- 133
| ||||| | || | ||||| |||||||| | |||||| ||||| | | |||
Sbjct 257838 ATTTCCAA-GACTTAAGCAGCCA-TAGTCCCTTTGAGAAGCTGGCCACGGA--AGAGTAC 257893
Query 134 --CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191
| | ||| ||||| ||| ||| | |||||| ||| | ||||||| ||||||||
Sbjct 257894 CACCACATAGCTTGTTAGCTGGTCAAGTT-TCGTTCATTAATGAAATTAACTAGACAAAT 257952
Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
||||||||||| ||||||||||||||||| |||||| |||| ||||||||||| | ||
Sbjct 257953 CACTCCACCAATTAAGAACGGCCATGCACTACCACCTATAG-GTCAAGAAAGAGATCTCT 258011
Query 252 ATCTG 256
||||
Sbjct 258012 GTCTG 258016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796665650805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |