Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5054 300 3e-79 seq2945 288 2e-75 seq1026 288 2e-75 seq2977 282 7e-74 seq471 241 2e-61 seq2534 168 1e-39 >seq5054 Length=11143 Score = 300 bits (332), Expect = 3e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7888 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7829 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 7828 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 7771 Query 120 CCACCAAC-CATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || | |||| |||||||| | ||||||||||||||| ||||| Sbjct 7770 CCGTGGAGGCGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 7711 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 7710 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 7651 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 7650 AGAAAGAGCTCTCAATCTGTC 7630 >seq2945 Length=173978 Score = 288 bits (318), Expect = 2e-75 Identities = 223/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 137307 ACTCGTTGAATACATTAGTGTAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCATAGA 137366 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 137367 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 137424 Query 120 CCACCAAC-CATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || | |||| |||||||| | ||||||||||||||| ||||| Sbjct 137425 CCGTGGAGGCGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 137484 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 137485 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 137544 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 137545 AGAAAGAGCTCTCAATCTGTC 137565 Score = 194 bits (214), Expect = 3e-47 Identities = 167/202 (83%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCA 118 ||||| ||||||||||||||||| | | || |||| | ||||||||| |||||||| Sbjct 102378 ACCTGCTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTATAAGAAGCTG 102435 Query 119 GCCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | | | || || | |||| |||||||| | ||||||||||||||| |||| Sbjct 102436 GTCGTGGAGTTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGA 102495 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 102496 ATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 102555 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||| Sbjct 102556 AAGAAAGAGCTCTCAGTCTGTC 102577 Score = 147 bits (162), Expect = 3e-33 Identities = 105/117 (90%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102230 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 102289 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGC 116 |||||||||||||||||||||| ||||| |||| | |||||||||||||||||| Sbjct 102290 CCTGTTATTGCCTCAAACTTCC-TTGGC-CTAAGCGGCCATAGTCCCTCTAAGAAGC 102344 >seq1026 Length=119729 Score = 288 bits (318), Expect = 2e-75 Identities = 223/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 6632 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGGATCACAGA 6691 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 6692 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 6749 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| |||||||| | ||||||||||||||| ||||| Sbjct 6750 CCGTGGAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 6809 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6810 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 6869 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 6870 AGAAAGAGCTCTCAGTCTGTC 6890 >seq2977 Length=12861 Score = 282 bits (312), Expect = 7e-74 Identities = 222/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5381 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCATAGA 5322 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 5321 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 5264 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| |||||||| | ||||||||||||||| ||||| Sbjct 5263 CCGTGGAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 5204 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5203 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 5144 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||| ||| ||| |||||| Sbjct 5143 AGAAAGCGCTCTCAGTCTGTC 5123 >seq471 Length=9362 Score = 241 bits (266), Expect = 2e-61 Identities = 211/260 (81%), Gaps = 16/260 (6%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3008 CCTTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 2949 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120 |||| || | |||| |||||| |||||||||||||| || || Sbjct 2948 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 2891 Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || ||| || || | | ||| |||||||| || |||||||||||||||| ||| Sbjct 2890 GCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAAT 2831 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2830 TAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAA 2771 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 2770 GAAAGAGCTCTCAATCTGTC 2751 >seq2534 Length=3965412 Score = 168 bits (186), Expect = 1e-39 Identities = 189/245 (77%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||| ||| | ||||| ||| |||||||| ||||||||||||||||||||| |||| Sbjct 257778 AGTGTAACGCACTTGCGGTCCAAAACATCTATATGCATCACAGACCTGTTATTGCGTCAA 257837 Query 78 ACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT-- 133 | ||||| | || | ||||| |||||||| | |||||| ||||| | | ||| Sbjct 257838 ATTTCCAA-GACTTAAGCAGCCA-TAGTCCCTTTGAGAAGCTGGCCACGGA--AGAGTAC 257893 Query 134 --CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | ||| ||||| ||| ||| | |||||| ||| | ||||||| |||||||| Sbjct 257894 CACCACATAGCTTGTTAGCTGGTCAAGTT-TCGTTCATTAATGAAATTAACTAGACAAAT 257952 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||||||||| ||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct 257953 CACTCCACCAATTAAGAACGGCCATGCACTACCACCTATAG-GTCAAGAAAGAGATCTCT 258011 Query 252 ATCTG 256 |||| Sbjct 258012 GTCTG 258016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796665650805