Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5615 168 1e-39 seq6319 109 1e-21 seq5809 109 1e-21 seq548 96.9 7e-18 seq2507 82.4 1e-13 >seq5615 Length=2860312 Score = 168 bits (186), Expect = 1e-39 Identities = 166/212 (78%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| ||||||||||| |||||||||||| ||||| | |||| | Sbjct 658144 CAGTTTCTATGGGGCGTAGGCCTCCCAAAGGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 658203 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 ||| ||| | || | | |||||||||||| ||||| | ||||||| | |||| Sbjct 658204 GCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGTAAGACCCA 658262 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 | ||| ||||||||| |||||||| |||| ||||||| |||||| || ||||| ||||| Sbjct 658263 CCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCG 658322 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| || |||||| Sbjct 658323 TCGCTCAACGGATAAAAGTTACTCTAGGGATA 658354 >seq6319 Length=5966559 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 240 GACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGG 299 || |||| | ||| ||||||||| |||||||| |||| ||||||| |||||| || ||| Sbjct 213902 GAGACCCACCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGG 213961 Query 300 AACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||||||||| ||||||||||| ||| || |||||| Sbjct 213962 AAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 214001 >seq5809 Length=1953311 Score = 109 bits (120), Expect = 1e-21 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC-CTCAAGTCTAGCAGGGACGAAAGT 269 |||||||||||||||||| | |||| ||| | ||| | | ||| ||||||| | ||| | Sbjct 209255 AGTGCAAAGGCAAAAGGGAGCTTGATTGCAAGACCTCCCTGGTCGAGCAGGGGCAAAATT 209314 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 ||| || |||||| | ||||||||| ||||| ||||||||||| || ||||||| ||| Sbjct 209315 CGGCCTCAATGATTTGACGGTGCTGAGTGGAAGGGCCGTCGCTCATCGAATAAAAGTTAC 209374 Query 330 CCTGGGGATA 339 | |||||| Sbjct 209375 TTTAGGGATA 209384 Score = 109 bits (120), Expect = 1e-21 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC-CTCAAGTCTAGCAGGGACGAAAGT 269 |||||||||||||||||| | |||| ||| | ||| | | ||| ||||||| | ||| | Sbjct 211153 AGTGCAAAGGCAAAAGGGAGCTTGATTGCAAGACCTCCCTGGTCGAGCAGGGGCAAAATT 211212 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 ||| || |||||| | ||||||||| ||||| ||||||||||| || ||||||| ||| Sbjct 211213 CGGCCTCAATGATTTGACGGTGCTGAGTGGAAGGGCCGTCGCTCATCGAATAAAAGTTAC 211272 Query 330 CCTGGGGATA 339 | |||||| Sbjct 211273 TTTAGGGATA 211282 >seq548 Length=2303557 Score = 96.9 bits (106), Expect = 7e-18 Identities = 156/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | ||| || || ||| ||||||| ||||||||||| |||| ||||| Sbjct 898666 GGGACAATCTCAAGTGGACATTTTCTATGGGGCGTAAGCCTCCCAAAGGATAACAGAGGC 898725 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | |||| | | || |||| |||| || |||||||||||| ||||| | Sbjct 898726 GTGCAAAC-TGGACAAAGATTGG-------CCAT-CG---AGTGCAAAGGCAGAAGGGAG 898773 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| | | ||| | || ||| ||||| |||||||| |||| ||||||| | || Sbjct 898774 CTTGACTACAAGTCCCACCCATCGAGCGGGGACAAAAGTCGGCCTTAGTGATCCGACAGT 898833 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 | || ||||| ||| || ||| | ||||||||| ||| || Sbjct 898834 GTCGAGTGGAAGCGCCATCACTCAATGGATAAAAGTTACTCT 898875 >seq2507 Length=3123735 Score = 82.4 bits (90), Expect = 1e-13 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| ||||||||||| ||||||||||| Sbjct 2467958 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGGGTAACGGAGGC 2468017 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 2468018 GTGCAAAGGTTTCCTCGGGCCGGACGGAGA-TTGGCCCTCGAGTGCAAAGGCAGAAGGGA 2468076 Query 230 GTTTGACTGCGACACCC 246 | |||||||| | |||| Sbjct 2468077 GCTTGACTGCAAGACCC 2468093 Score = 73.4 bits (80), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||||||| | |||||||||||| |||| | |||| | | || ||| | || Sbjct 2468101 GCCTCCCAAGGGGTAACGGAGGCGTGCAAAAGTTTCCTCGGGATAGACGGAGATTG-GCC 2468159 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||||||| ||||| | |||||||| | |||| | ||| ||||||||| || Sbjct 2468160 CTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGTCGAGCAGGGACAAA 2468219 Query 267 AG 268 || Sbjct 2468220 AG 2468221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982229013280