Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20]
17,405 sequences; 296,383,220 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq5615 168 1e-39
seq6319 109 1e-21
seq5809 109 1e-21
seq548 96.9 7e-18
seq2507 82.4 1e-13
>seq5615
Length=2860312
Score = 168 bits (186), Expect = 1e-39
Identities = 166/212 (78%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188
|||||| ||||||| ||||||||||| |||||||||||| ||||| | |||| |
Sbjct 658144 CAGTTTCTATGGGGCGTAGGCCTCCCAAAGGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 658203
Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247
||| ||| | || | | |||||||||||| ||||| | ||||||| | ||||
Sbjct 658204 GCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGTAAGACCCA 658262
Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307
| ||| ||||||||| |||||||| |||| ||||||| |||||| || ||||| |||||
Sbjct 658263 CCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCG 658322
Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||| ||||||||||| ||| || ||||||
Sbjct 658323 TCGCTCAACGGATAAAAGTTACTCTAGGGATA 658354
>seq6319
Length=5966559
Score = 109 bits (120), Expect = 1e-21
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 240 GACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGG 299
|| |||| | ||| ||||||||| |||||||| |||| ||||||| |||||| || |||
Sbjct 213902 GAGACCCACCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGG 213961
Query 300 AACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 213962 AAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 214001
>seq5809
Length=1953311
Score = 109 bits (120), Expect = 1e-21
Identities = 103/130 (79%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC-CTCAAGTCTAGCAGGGACGAAAGT 269
|||||||||||||||||| | |||| ||| | ||| | | ||| ||||||| | ||| |
Sbjct 209255 AGTGCAAAGGCAAAAGGGAGCTTGATTGCAAGACCTCCCTGGTCGAGCAGGGGCAAAATT 209314
Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
||| || |||||| | ||||||||| ||||| ||||||||||| || ||||||| |||
Sbjct 209315 CGGCCTCAATGATTTGACGGTGCTGAGTGGAAGGGCCGTCGCTCATCGAATAAAAGTTAC 209374
Query 330 CCTGGGGATA 339
| ||||||
Sbjct 209375 TTTAGGGATA 209384
Score = 109 bits (120), Expect = 1e-21
Identities = 103/130 (79%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC-CTCAAGTCTAGCAGGGACGAAAGT 269
|||||||||||||||||| | |||| ||| | ||| | | ||| ||||||| | ||| |
Sbjct 211153 AGTGCAAAGGCAAAAGGGAGCTTGATTGCAAGACCTCCCTGGTCGAGCAGGGGCAAAATT 211212
Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
||| || |||||| | ||||||||| ||||| ||||||||||| || ||||||| |||
Sbjct 211213 CGGCCTCAATGATTTGACGGTGCTGAGTGGAAGGGCCGTCGCTCATCGAATAAAAGTTAC 211272
Query 330 CCTGGGGATA 339
| ||||||
Sbjct 211273 TTTAGGGATA 211282
>seq548
Length=2303557
Score = 96.9 bits (106), Expect = 7e-18
Identities = 156/222 (70%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| | ||| || || ||| ||||||| ||||||||||| |||| |||||
Sbjct 898666 GGGACAATCTCAAGTGGACATTTTCTATGGGGCGTAAGCCTCCCAAAGGATAACAGAGGC 898725
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
| |||| | | || |||| |||| || |||||||||||| ||||| |
Sbjct 898726 GTGCAAAC-TGGACAAAGATTGG-------CCAT-CG---AGTGCAAAGGCAGAAGGGAG 898773
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
|||||| | | ||| | || ||| ||||| |||||||| |||| ||||||| | ||
Sbjct 898774 CTTGACTACAAGTCCCACCCATCGAGCGGGGACAAAAGTCGGCCTTAGTGATCCGACAGT 898833
Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332
| || ||||| ||| || ||| | ||||||||| ||| ||
Sbjct 898834 GTCGAGTGGAAGCGCCATCACTCAATGGATAAAAGTTACTCT 898875
>seq2507
Length=3123735
Score = 82.4 bits (90), Expect = 1e-13
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| ||||||||||| |||||||||||
Sbjct 2467958 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGGGTAACGGAGGC 2468017
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 2468018 GTGCAAAGGTTTCCTCGGGCCGGACGGAGA-TTGGCCCTCGAGTGCAAAGGCAGAAGGGA 2468076
Query 230 GTTTGACTGCGACACCC 246
| |||||||| | ||||
Sbjct 2468077 GCTTGACTGCAAGACCC 2468093
Score = 73.4 bits (80), Expect = 8e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
||||||||| | |||||||||||| |||| | |||| | | || ||| | ||
Sbjct 2468101 GCCTCCCAAGGGGTAACGGAGGCGTGCAAAAGTTTCCTCGGGATAGACGGAGATTG-GCC 2468159
Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266
| | |||||||||||| ||||| | |||||||| | |||| | ||| ||||||||| ||
Sbjct 2468160 CTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGTCGAGCAGGGACAAA 2468219
Query 267 AG 268
||
Sbjct 2468220 AG 2468221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982229013280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |