Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3016 226 6e-57 seq1932 187 5e-45 seq2501 131 4e-28 seq6319 120 7e-25 seq1094 87.8 4e-15 seq676 87.8 4e-15 >seq3016 Length=869763 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 736105 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 736163 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 736164 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 736223 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 736224 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 736283 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 736284 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 736329 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 736330 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 736387 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 736388 GTCCGCCACT 736397 >seq1932 Length=4064500 Score = 187 bits (206), Expect = 5e-45 Identities = 239/324 (74%), Gaps = 19/324 (6%) Strand=Plus/Minus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || |||||| | | ||||| |||||| || |||||||||||||||||| || ||| Sbjct 1098135 AGGCCTTCTACCTC-CACGCAGCATTG-CTCTGTCAGGCTTTCGCCCATTGCGGAAAATT 1098078 Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 ||||| |||||||||||||| |||||||| |||||||||| | ||| |||| |||||||| Sbjct 1098077 CCCCATTGCTGCCTCCCGTAAGAGTCTGGGCCGTGTCTCAATCCCAATGTGGCTGATCAT 1098018 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||||| |||||| ||| ||| |||||||||| ||| ||| |||||| ||||||||||| Sbjct 1098017 CCTCTTGGACCAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACAAACTAGCTAAT 1097958 Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253 | || | | | || || | || || ||| |||| | | | | | Sbjct 1097957 CAGA--TGCGAGCCCCTCATCGGGC----------GGATTCCTCCTTTTGCTCCTCAG-C 1097911 Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTA 311 || | ||||||||| |||||||| ||| | ||| || ||| ||||| ||| || Sbjct 1097910 CTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTA 1097853 Query 312 GGCATTACTCACCCGTCCGCCGCT 335 || ||||||||||||||||| || Sbjct 1097852 CGCGTTACTCACCCGTCCGCCACT 1097829 >seq2501 Length=2328915 Score = 131 bits (144), Expect = 4e-28 Identities = 125/156 (80%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||| |||| ||||| || |||||| Sbjct 965193 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTTGCCCGTTGTCGAACATTCCC 965250 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||| |||||||| || ||| |||||| |||||||| |||||||||| Sbjct 965251 CACTGCTGCC-CCCATAGGAGTCCGGGCCGCATCTCAGCCCCAGTGTGGCTGATCATCCA 965309 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 |||||| || | ||| | | |||||| ||||| Sbjct 965310 AAATGACCAGCTAAGCATCATTGGCTTGGTCAGCCA 965345 >seq6319 Length=5966559 Score = 120 bits (132), Expect = 7e-25 Identities = 113/143 (79%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCC-GTAGGAGTCTGGACCGTGTCTCAGT 115 |||||||| || ||||||||| ||||||| || |||||||||| | |||||||||||| Sbjct 2285721 GCCCATTGCAAAAAATTCCCCACCGCTGCCTTCCTGTAGGAGTCTAGGCCGTGTCTCAGT 2285780 Query 116 TCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA 175 |||||||| || |||||| || |||||| || |||| | |||| | | ||| Sbjct 2285781 CCCAGTGTGGCTAATCATCTCCTTGGACCAGCTAATGATCATAACCTTAATAATATATTG 2285840 Query 176 CCTCACCAACTAGCTAATCCGAC 198 ||||||||||||||||||| ||| Sbjct 2285841 CCTCACCAACTAGCTAATCAGAC 2285863 >seq1094 Length=469266 Score = 87.8 bits (96), Expect = 4e-15 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| | |||||||||| ||| | || ||||||||||||||||| | || |||| Sbjct 431447 AGTCTGGGCGGTGTCTCAGTCCCAATATGGCTGATCATCCTCTCAGATTA-CTATTGATC 431389 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||||| ||| ||| ||| ||| ||||| |||||||| Sbjct 431388 ATCGCCTCGGTAAGCTATTGCCTTACCAATTAGCTAAT 431351 >seq676 Length=1051120 Score = 87.8 bits (96), Expect = 4e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 |||||||| | | | |||| |||||||||||||| || | ||| |||| ||| ||||| Sbjct 374528 GTGTCTCAATCCTAATGTGGCTGATCATCCTCTCCCACTAACTACTGATCATCGACTTGG 374587 Query 166 TGAGCCATTACCTCACCAACTAGCTAAT 193 | ||| ||| |||||||||||||||||| Sbjct 374588 TAAGCTATTGCCTCACCAACTAGCTAAT 374615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071813418400