Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq16670 111 6e-22 seq4399 82.4 3e-13 >seq16670 Length=793 Score = 111 bits (122), Expect = 6e-22 Identities = 115/148 (78%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 435 AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCAC 489 |||||| || |||||| ||| |||||| ||| | | |||||| || ||| ||| Sbjct 98 AAAGGCTCTA-AGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 156 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| |||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 157 TCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGA 216 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||| || ||||||||| |||||||||| Sbjct 217 GGAATACTTAGGCTTAGAGGGTGGTCCC 244 >seq4399 Length=3202280 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||||| |||||||| |||||| | ||||||| ||||| |||||||||||| Sbjct 2002218 GTTCTTTTCACCCTTCCCTCAAGGTACTACTTCGCTATCAGTCACTCAGGAGTATTTAGC 2002277 Query 562 CTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||| | | |||||||| ||| || Sbjct 2002278 CTTACAAGGTGGTCCTTACTGCTTCACACGGGATTCCA 2002315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817283646720