Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq16670 102 2e-19 seq4399 87.8 4e-15 >seq16670 Length=793 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 118 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 176 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 177 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 236 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 237 GTGGTCCCCC 246 >seq4399 Length=3202280 Score = 87.8 bits (96), Expect = 4e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||| ||||||| ||| ||||| |||| |||| |||||||||| Sbjct 2002218 GTTCTTTTCACCCTTCCCTCAAGGTACTACTTCGCTATCAGTCACTCAGGAGTATTTAGC 2002277 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | |||| || || | ||||| |||| ||||||| Sbjct 2002278 CTTACAAGGTGGTCCTTACTGCTTCACACGGGATTCCACGTGCCCCGTGCTACTCG 2002333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241383899520