Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3016 219 8e-55 seq1932 188 1e-45 seq6319 98.7 2e-18 seq2501 80.6 5e-13 seq676 80.6 5e-13 seq1094 77.0 6e-12 >seq3016 Length=869763 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 736110 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 736169 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 736170 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 736229 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 736230 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 736289 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 736290 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 736333 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 736334 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 736392 Query 300 CCACT 304 ||||| Sbjct 736393 CCACT 736397 >seq1932 Length=4064500 Score = 188 bits (208), Expect = 1e-45 Identities = 219/293 (75%), Gaps = 18/293 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||| |||||||||||||| |||||||||||| Sbjct 1098104 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCATTGCTGCCTCCCGTAAGAGTCTGGGCCG 1098045 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| |||||||||||| | ||| ||||| | || ||||| ||| ||| |||||| Sbjct 1098044 TGTCTCAATCCCAATGTGGCTGATCATCCTCTTGGACCAGCTACTAATCATCGCCTTGGT 1097985 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||| ||||| |||||| | |||||||| || | || ||| || Sbjct 1097984 AAGCTATTGCCTCACAAACTAGCTAATCAGATGCGAGCCCCTCATCGGGCGGATTCCTCC 1097925 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| |||||||| | Sbjct 1097924 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 1097881 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || |||||||| || ||| ||||||||||||||||||||| Sbjct 1097880 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 1097829 >seq6319 Length=5966559 Score = 98.7 bits (108), Expect = 2e-18 Identities = 191/276 (69%), Gaps = 17/276 (6%) Strand=Plus/Plus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCC-GTAGGAGTCTGGGCCGTGTCTCAGTC 82 ||||||| || || |||||| ||||||| || |||||||||| ||||||||||||||| Sbjct 2285722 CCCATTGCAAAAAATTCCCCACCGCTGCCTTCCTGTAGGAGTCTAGGCCGTGTCTCAGTC 2285781 Query 83 CCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTAT 142 ||| |||||| ||| | || | || |||| |||| | ||| | |||| Sbjct 2285782 CCAGTGTGGCTAATCATCTCCTTGGACCAGCTAATGATCATAACCTTAATAATATATTGC 2285841 Query 143 CTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGA 202 ||||||||||| |||||| | ||| | ||| || |||| | | |||| Sbjct 2285842 CTCACCAACTAGCTAATCAGACGCCAACCCGTC-CTCAG-GTAGATTCTT---------C 2285890 Query 203 ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTC 262 | ||| ||||| | | ||| ||||||||| || ||| || ||| |||| ||| Sbjct 2285891 CTTTTGC--TCCTCAGCC--TATTGGGTATTAGCAGTCATTTTCAGCTGTTGTTCCCCTC 2285946 Query 263 TGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | || ||||| || || ||| ||| |||||||||| Sbjct 2285947 TAAAGGGCAGATT-CTTACGCATTATTCACCCGTCC 2285981 >seq2501 Length=2328915 Score = 80.6 bits (88), Expect = 5e-13 Identities = 94/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || ||| ||| |||| || || ||||||||||||| ||| |||||||| Sbjct 965215 GCTGGATCGGGCTTTTGCCCGTTGTCGAACATTCCCCACTGCTGCC-CCCATAGGAGTCC 965273 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||| |||||| |||| |||||| | ||| || | || |||| ||| | || Sbjct 965274 GGGCCGCATCTCAGCCCCAGTGTGGCTGATCATCCAAAATGACCAGCTAAGCATCATTGG 965333 Query 127 CTTGGT 132 |||||| Sbjct 965334 CTTGGT 965339 >seq676 Length=1051120 Score = 80.6 bits (88), Expect = 5e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 |||||||| ||| |||||||| | ||| |||||| | |||| |||| ||| ||||| Sbjct 374528 GTGTCTCAATCCTAATGTGGCTGATCATCCTCTCCCACTAACTACTGATCATCGACTTGG 374587 Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 | |||||| ||||||||||| ||||| | || |||||| || || Sbjct 374588 TAAGCTATTGCCTCACCAACTAGCTAATTAGACGTGAGCCCCTCCTT 374634 >seq1094 Length=469266 Score = 77.0 bits (84), Expect = 6e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||||||||| |||||||||||||||| |||| | ||| |||||||| ||| |||| Sbjct 431447 AGTCTGGGCGGTGTCTCAGTCCCAATATGGCTGATCATCCTCTCAG-ATTACTATTGATC 431389 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 ||| || ||| |||||| || ||||| || ||||| ||||||| Sbjct 431388 ATCGCCTCGGTAAGCTATTGCCTTACCAATTAGCTAATGAAACGCGAGC 431340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998226228480