Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq5054 84.2 3e-14 seq2977 84.2 3e-14 seq2945 84.2 3e-14 seq1026 84.2 3e-14 seq471 77.0 4e-12 >seq5054 Length=11143 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||||| | ||||| Sbjct 7235 CCAACACAATAGGATCGGAA-TCCTATGATGTTATCCCATGCTAATGTATTCAGAGCGTA 7177 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 7176 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 7139 >seq2977 Length=12861 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||||| | ||||| Sbjct 4728 CCAACACAATAGGATCGGAA-TCCTATGATGTTATCCCATGCTAATGTATTCAGAGCGTA 4670 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 4669 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 4632 >seq2945 Length=173978 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||||| | ||||| Sbjct 103107 CCAACACAATAGGATCGGAA-TCCTATGATGTTATCCCATGCTAATGTATTCAGAGCGTA 103165 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 103166 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 103203 >seq1026 Length=119729 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||||| | ||||| Sbjct 7285 CCAACACAATAGGATCGGAA-TCCTATGATGTTATCCCATGCTAATGTATTCAGAGCGTA 7343 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 7344 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 7381 >seq471 Length=9362 Score = 77.0 bits (84), Expect = 4e-12 Identities = 101/133 (76%), Gaps = 8/133 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | |||| ||| Sbjct 2357 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACTAGCATTCAGGCA 2299 Query 70 -TA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 || ||||||||| | ||||||||||| |||| ||||| || | || || || | Sbjct 2298 ATATCCAGCCTGCTTGAAGCACTCTAATTTGTTCAAAGTAAACGTGCCGG-CCCACCTCG 2240 Query 125 ACAC-CAATGAAG 136 |||| |||||||| Sbjct 2239 ACACTCAATGAAG 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595099642770