Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1090 118 2e-24 seq4892 96.9 8e-18 seq4293 73.4 9e-11 >seq1090 Length=2729200 Score = 118 bits (130), Expect = 2e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| ||||||| | | || || |||||| |||||||||||||||||||| Sbjct 14010 CCCGATTCATCTTCGGCGCTAGAGCGCTCGATAAGTGAGTTATTACGCACTCTTTCAAGG 13951 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTG 351 |||||||||| | || ||| |||| | ||||| ||| ||| || |||||| | || Sbjct 13950 GTGGCTGCTTCTAGGCAAACGTCCTAGCTGTCTCTGCA-CTCTTACCTCCTTTATTATTG 13892 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| | |||||| ||||||| Sbjct 13891 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAACTGTTTTCCTCTCG 13843 >seq4892 Length=730074 Score = 96.9 bits (106), Expect = 8e-18 Identities = 120/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||| | | ||| ||||||| | | || || ||||| ||||||||||||||||| Sbjct 362303 AGCCCTGTT-CATCTTCGGCGCAAGAGCTCTCGATTAGTGAATTATTACGCACTCTTTCA 362245 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 ||| | | |||||| | || ||||||||| ||||| ||| | || |||||| ||| Sbjct 362244 AGGGTAGTTGCTTCTAGGCATACCTCCTGGCTGTCTCTGCACCCTTACCTCCTTTATCAC 362185 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392 |||| || |||||| ||||| ||| |||||| | | |||| Sbjct 362184 TGAGCGGTCATTTAGGGACCTTAACTGGTGATCTAGACAGTTT 362142 >seq4293 Length=5823730 Score = 73.4 bits (80), Expect = 9e-11 Identities = 94/127 (74%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||||||| | | ||||| ||| ||| ||| | ||||| || | || || || Sbjct 5602665 CCACAGCTTCAACATGTTGCTTAA-CCCTGCT-CATCTTTGGCGCAAAAGCGCTCGATCA 5602722 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||| || ||||| | |||||| || | || |||||| ||||||| | Sbjct 5602723 ATGAGCTATTACGCAGTCCTTCAAAGTTGGCTGTTTTTAGGCAAACCTCATGGTTGTTTT 5602782 Query 327 CGCAACT 333 |||| || Sbjct 5602783 CGCACCT 5602789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177395038720