Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3016 149 1e-33 seq1932 95.1 2e-17 >seq3016 Length=869763 Score = 149 bits (164), Expect = 1e-33 Identities = 204/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 735764 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 735823 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 735824 CCGATCTCAGTGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 735883 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 735884 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 735943 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 735944 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 736003 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 736004 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 736048 >seq1932 Length=4064500 Score = 95.1 bits (104), Expect = 2e-17 Identities = 186/274 (68%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | ||| | || || ||| | |||||| | | || || Sbjct 1098452 CTCAGTGTCAGTGTCGGCCCAATAGAGTGCTTTTGCCGTTAGTGTTCTTTCCGATCTCAG 1098393 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||||||||| ||| | |||||| |||| | | | |||| || |||| Sbjct 1098392 TGCATTTCACCGCTCCACCGGAAATTCCCTATGCCCTTGCCGTACTCCAGCTTGGTAGTT 1098333 Query 136 TCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCC 192 || | || |||| ||||||||| | | ||| || | |||| || || Sbjct 1098332 TCCACCGC---CTATCCAGGGTTGAGCTCTCGGATTTGACGGCGAACTTAAAAAGCCACC 1098276 Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252 |||| | ||||| |||||| | ||| ||||||||||| ||| |||||||||||| Sbjct 1098275 TACAAACGTTTTACGCCCAATCATTCCAAATAACGCTTGCATCCTCTGTATTACCGCGGT 1098216 Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||||||| ||||||||| ||||||||| || Sbjct 1098215 TGCTGGCACAGAGTTAGCCGACGCTTATTCCCCA 1098182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828660255255