Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5054 136 4e-30 seq2977 131 2e-28 seq1026 127 2e-27 seq2945 122 9e-26 seq471 105 7e-21 >seq5054 Length=11143 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 7139 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7198 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || || ||| || ||||||| Sbjct 7199 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 7256 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 7257 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 7316 Query 190 T 190 | Sbjct 7317 T 7317 >seq2977 Length=12861 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 4632 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 4691 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || || ||| || ||||||| Sbjct 4692 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 4749 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| || |||||| | ||||| || |||| |||||||||||||||||||| Sbjct 4750 TTAACAGGGACAGGCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 4809 Query 190 T 190 | Sbjct 4810 T 4810 >seq1026 Length=119729 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 7381 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7322 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || || ||| || ||||||| Sbjct 7321 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 7264 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | |||||| | ||||| || |||| |||||||||||||||||||| Sbjct 7263 TTAACAGGGACAATCGGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 7204 Query 190 T 190 | Sbjct 7203 T 7203 >seq2945 Length=173978 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 103203 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 103144 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || || ||| || ||||||| Sbjct 103143 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 103086 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | || ||||||||| | |||| || |||| ||||||||||||||||||| Sbjct 103085 TTAACAGAGACAGTCGGGGGCATTCCTATTTCATAGTCAGTGGTGAAATTCTTGGATTTA 103026 Query 190 T 190 | Sbjct 103025 T 103025 Score = 89.7 bits (98), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 34 CGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCG 92 || |||||||| |||| |||| |||||||||| ||||| |||| | |||||| | | Sbjct 138040 CGGTCAAAGCAAGCCTACGCTCTGAATACATTAGCATGGGATAACATCATAGGAT-TCTG 137982 Query 93 GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGT 152 | || || ||| || || ||| | |||||||| || | ||| ||||||||| | Sbjct 137981 ATCCTGTTGTGTTGGCCTCCGGGATTGGA-GTAATGATTAACAGGGACAGTCGGGGGCAT 137923 Query 153 CAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| || |||| ||||||||||||||||||||| Sbjct 137922 TCGTATCTCATAGTCAGAGGTGAAATTCTTGGATTTAT 137885 >seq471 Length=9362 Score = 105 bits (116), Expect = 7e-21 Identities = 133/181 (73%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT----TTGCTCGAATACATTA 65 || ||||||||||| ||||||||| | | |||||||| |||| |||| | Sbjct 2254 ACGTTTACTTTGAACAAATTAGAGTGCTTCAAGCAGGCTGGATATTGCCTGAATGCTAGT 2313 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| || ||| ||| Sbjct 2314 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 2372 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| ||| || || |||||| | ||||| || | |||||||||||||||| Sbjct 2373 ATGATTAATGGAGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 2432 Query 186 T 186 | Sbjct 2433 T 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511913671200