Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20]
17,405 sequences; 296,383,220 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq5054 136 4e-30
seq2977 131 2e-28
seq1026 127 2e-27
seq2945 122 9e-26
seq471 105 7e-21
>seq5054
Length=11143
Score = 136 bits (150), Expect = 4e-30
Identities = 141/181 (78%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| |||
Sbjct 7139 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7198
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || | ||||| ||| || || ||| || |||||||
Sbjct 7199 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 7256
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 7257 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 7316
Query 190 T 190
|
Sbjct 7317 T 7317
>seq2977
Length=12861
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| |||
Sbjct 4632 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 4691
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || | ||||| ||| || || ||| || |||||||
Sbjct 4692 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 4749
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| || |||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 4750 TTAACAGGGACAGGCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 4809
Query 190 T 190
|
Sbjct 4810 T 4810
>seq1026
Length=119729
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| |||
Sbjct 7381 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 7322
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || | ||||| ||| || || ||| || |||||||
Sbjct 7321 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 7264
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| | |||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 7263 TTAACAGGGACAATCGGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 7204
Query 190 T 190
|
Sbjct 7203 T 7203
>seq2945
Length=173978
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| |||
Sbjct 103203 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 103144
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || | ||||| ||| || || ||| || |||||||
Sbjct 103143 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTCCGGGATCGGA-GTAATGA 103086
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | || ||||||||| | |||| || |||| |||||||||||||||||||
Sbjct 103085 TTAACAGAGACAGTCGGGGGCATTCCTATTTCATAGTCAGTGGTGAAATTCTTGGATTTA 103026
Query 190 T 190
|
Sbjct 103025 T 103025
Score = 89.7 bits (98), Expect = 5e-16
Identities = 117/158 (74%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 34 CGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCG 92
|| |||||||| |||| |||| |||||||||| ||||| |||| | |||||| | |
Sbjct 138040 CGGTCAAAGCAAGCCTACGCTCTGAATACATTAGCATGGGATAACATCATAGGAT-TCTG 137982
Query 93 GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGT 152
| || || ||| || || ||| | |||||||| || | ||| ||||||||| |
Sbjct 137981 ATCCTGTTGTGTTGGCCTCCGGGATTGGA-GTAATGATTAACAGGGACAGTCGGGGGCAT 137923
Query 153 CAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|||| || |||| |||||||||||||||||||||
Sbjct 137922 TCGTATCTCATAGTCAGAGGTGAAATTCTTGGATTTAT 137885
>seq471
Length=9362
Score = 105 bits (116), Expect = 7e-21
Identities = 133/181 (73%), Gaps = 5/181 (3%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT----TTGCTCGAATACATTA 65
|| ||||||||||| ||||||||| | | |||||||| |||| |||| |
Sbjct 2254 ACGTTTACTTTGAACAAATTAGAGTGCTTCAAGCAGGCTGGATATTGCCTGAATGCTAGT 2313
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
||||||||||| ||||||||| | |||||||||||||| ||||| || ||| |||
Sbjct 2314 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 2372
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| ||| || || |||||| | ||||| || | ||||||||||||||||
Sbjct 2373 ATGATTAATGGAGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 2432
Query 186 T 186
|
Sbjct 2433 T 2433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511913671200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |