Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6319 138 2e-30 seq4293 134 2e-29 seq2507 118 2e-24 seq666 104 4e-20 seq3414 96.9 5e-18 seq1287 93.3 7e-17 seq1932 89.7 8e-16 seq4950 86.0 1e-14 seq1810 86.0 1e-14 seq5472 82.4 1e-13 seq2492 75.2 2e-11 >seq6319 Length=5966559 Score = 138 bits (152), Expect = 2e-30 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| ||||| |||| ||| |||| |||||||||| ||||||| || |||||||| Sbjct 4242435 AACTGGTACACCAAAGGTGCATCCTTCCCCGTCCTCTCGTTCTAAGGAAAGATCCTCTCA 4242376 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 ||| |||||||| |||||| ||| || | | || ||||||||||||| |||| Sbjct 4242375 GTGTTCTGACGCCCACACCGGATATGGATAGAGTTATGTCATGACGTTCTGAACCAAGCT 4242316 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 | ||| ||| |||||||| |||||| ||||||||||| || Sbjct 4242315 CACGTACCTTTTTAATGGACGAACATGCCAACCCTTGGAAC 4242275 >seq4293 Length=5823730 Score = 134 bits (148), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| || ||||| || ||||||| ||| || ||||||||| || |||||||| || Sbjct 5166187 GTCCTTCTCGGTCATC-CGTACTAGGGAAAGGTCCTCTCAATGCTCAAACGCCCACACCG 5166129 Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||| |||||||| |||||||||||||||||||| | | || ||| ||||| | Sbjct 5166128 GATATGGACCAAACTGTCTAACGACGTTCTGAACCCAGCTCACTTACCGCTTCAATGGAC 5166069 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCA----GCCCCAGGATGAGACGAGCCGACATCG 275 ||||| ||||||||| || |||| || |||||| | | || |||||||||||| Sbjct 5166068 AAACAG-CCAACCCTT--AACATACTACAGCCTGCCCCAAGTGGCGAAGAGCCGACATCG 5166012 >seq2507 Length=3123735 Score = 118 bits (130), Expect = 2e-24 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||||| |||||| ||||| ||| |||| ||| || || Sbjct 2806400 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCTGCTCCGCACTTGGCTACCTAGTG 2806459 Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | ||| || | || |||| ||||| |||| |||| |||||||||||||||||| Sbjct 2806460 TTTATCGTGGGCACGATAATTGGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACT 2806519 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| | |||| |||||||| |||||| || Sbjct 2806520 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACATCAGATATGGACCGAATTGTCTCACG 2806579 Query 183 ACGTTCTGAA 192 || |||| || Sbjct 2806580 ACATTCTAAA 2806589 >seq666 Length=4378875 Score = 104 bits (114), Expect = 4e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 117 CGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGT 176 ||||||| ||| | ||||||||| || || ||||| |||||| |||||||||||| Sbjct 2535043 CGTACTAGGGAAATGTCCTCTCAATGCTCTAACTCCCACACCGGATATGGACCGAACTGT 2535102 Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||| |||||| |||||||||||| || || ||||||||||| || ||||| Sbjct 2535103 CTCATGACGTTATGAACCCAGCTCAGGTACCGCTTTAATGGGCAAAGAGCCC 2535154 >seq3414 Length=1935336 Score = 96.9 bits (106), Expect = 5e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 149 CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCT 208 || |||| |||||| ||| ||||||||||| ||||||| |||||||| | | | | || Sbjct 1600678 CGTCCACACCGGATATGGATCGAACTGTCTCTCGACGTTTTGAACCCAACCCACATACCA 1600737 Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||||||||||| ||||||||| ||| || || | | |||||| Sbjct 1600738 CTTTAATGGGCGAATAGCCCAACCATTGAAACATATTGCGGCCCCA 1600783 >seq1287 Length=5097827 Score = 93.3 bits (102), Expect = 7e-17 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 |||||||||||||| ||| |||||| || ||||| || || |||||||||||||||| Sbjct 4464434 GACCGAACTGTCTCATGACATTCTGAGCCTAGCTCAAGTACCGCTTTAATGGGCGAACAA 4464375 Query 226 CCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 |||||||||| | || || | ||||||| | | | |||||||| || Sbjct 4464374 CCCAACCCTTAGAACATATTATAGCCCCATGCGGCAAAGAGCCGACGTC 4464326 >seq1932 Length=4064500 Score = 89.7 bits (98), Expect = 8e-16 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 2956821 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 2956880 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATA 163 ||||||||| || |||||||| |||||| Sbjct 2956881 TCCTCTCAATGCTCTAACGCCCACACCGGATA 2956912 >seq4950 Length=2340596 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| | ||| ||| |||||||||||||||||| || || ||||| ||| || Sbjct 1606541 ACGCCCACAGCAGATGTGGATGGAACTGTCTCGCGACGTTATGTGCCTAGCTCACGTACC 1606482 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 | ||||||| ||||||| |||| || ||| || ||| |||||| Sbjct 1606481 GCATTAATGGCCGAACAGTCCAATCCATGGAACACACTGCAGCCC 1606437 >seq1810 Length=4673341 Score = 86.0 bits (94), Expect = 1e-14 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| ||||| |||||| ||| |||| ||| |||||| Sbjct 2304195 GGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCG 2304254 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||| | ||||||| |||||||||| |||| || ||||||||||||||| Sbjct 2304255 TTTATTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCACGGTCCTCTCGTACT 2304314 Query 123 AAGGACAGCTCC 134 | ||| || ||| Sbjct 2304315 AGGGAAAGGTCC 2304326 >seq5472 Length=330681 Score = 82.4 bits (90), Expect = 1e-13 Identities = 86/113 (76%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 |||||| |||||| | | ||| |||| | ||||| ||||| ||||||| || ||||||| Sbjct 113910 ACCGAATTGTCTCACAATGTTATGAATCGAGCTCACGTGCTGCTTTAATAGGTGAACAGC 113969 Query 227 CCAACCCTTGGGACCTA----CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| |||||| || || || || ||| ||| | || |||| ||||||| Sbjct 113970 CCAATCCTTGGAACATATACTCTACAACCCTAGGTGGCGAAGAGCTGACATCG 114022 >seq2492 Length=5361119 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||||||||||||||||||||||||| || |||| ||||| |||| | | || Sbjct 404551 CCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCTCAGGTAGCAAAGA 404610 Query 266 GCCGACATC 274 | ||||||| Sbjct 404611 GTCGACATC 404619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780668348580