Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3016 266 8e-69 seq1932 230 6e-58 seq2501 116 9e-24 seq6319 104 6e-20 seq1094 78.8 2e-12 >seq3016 Length=869763 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 736079 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 736138 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 736139 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 736198 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 736199 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 736258 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 736259 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 736307 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 736308 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 736365 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 736366 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 736411 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 736412 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 736458 >seq1932 Length=4064500 Score = 230 bits (254), Expect = 6e-58 Identities = 298/410 (73%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| ||||||||| | | ||||| |||| ||| |||||||| |||||||| Sbjct 1098147 TTCACGACCCATAGGCCTTCTACCTCCACGCAGCATTGCTCTGTCAGGCTTTCGCCCATT 1098088 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| |||||||||||||| |||||||| |||||||||| | ||| ||| Sbjct 1098087 GCGGAAAATTCCCCATTGCTGCCTCCCGTAAGAGTCTGGGCCGTGTCTCAATCCCAATGT 1098028 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||| ||||||||| ||| |||||| ||| || ||| || | | | Sbjct 1098027 GGCTGATCATCCTCTTGGACCAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACAA 1097968 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || | | | || | || | || ||| ||| |||| Sbjct 1097967 ACTAGCTAATCAGATGCGAGCCCCTC--------ATCGGGCGGA--TTCCTCCT-TTTGC 1097919 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 1097918 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 1097861 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 1097860 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 1097815 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 1097814 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 1097768 >seq2501 Length=2328915 Score = 116 bits (128), Expect = 9e-24 Identities = 119/154 (77%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||| |||| || |||||||| Sbjct 965193 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTTGCCCGTTGTCGAACATTCCCCA 965252 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||| |||||||| || ||| |||||| |||||||||||| |||||| Sbjct 965253 CTGCTGCC-CCCATAGGAGTCCGGGCCGCATCTCAGCCCCAGTGTGGCTGATCATCCAAA 965311 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCA 173 ||||||||| | ||| | | || ||| |||| Sbjct 965312 ATGACCAGCTAAGCATCATTGGCTTGGTCAGCCA 965345 >seq6319 Length=5966559 Score = 104 bits (114), Expect = 6e-20 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCC-GTAGGAGTCTGGACCGTGTCTCAGT 116 |||||||| || ||||||||| ||||||| || |||||||||| | |||||||||||| Sbjct 2285721 GCCCATTGCAAAAAATTCCCCACCGCTGCCTTCCTGTAGGAGTCTAGGCCGTGTCTCAGT 2285780 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176 ||||||||||| ||||| || ||||||||| |||| | ||| | ||| Sbjct 2285781 CCCAGTGTGGCTAATCATCTCCTTGGACCAGCTAATGATCATAACCTTAATAATATATTG 2285840 Query 177 CCCCGCCAACTAGCTAATC 195 || | |||||||||||||| Sbjct 2285841 CCTCACCAACTAGCTAATC 2285859 >seq1094 Length=469266 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/98 (79%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 97 AGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||||||| | |||||||||| ||| | |||||| ||||||||||||| | ||| |||| Sbjct 431447 AGTCTGGGCGGTGTCTCAGTCCCAATATGGCTGATCATCCTCTCAGATTA-CTATTGATC 431389 Query 157 GTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||| ||| || ||| || |||| |||||||| Sbjct 431388 ATCGCCTCGGTAAGCTATTGCCTTACCAATTAGCTAAT 431351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222187241280