Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3016 329 1e-87 seq1932 282 1e-73 seq6319 107 6e-21 seq2501 104 7e-20 seq676 84.2 7e-14 >seq3016 Length=869763 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 736276 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 736217 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 736216 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 736157 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 736156 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 736097 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 736096 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 736037 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 736036 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 735977 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 735976 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 735935 >seq1932 Length=4064500 Score = 282 bits (312), Expect = 1e-73 Identities = 269/342 (79%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| ||||||||||||||| || ||| || |||||||||||||| ||| |||||| | Sbjct 1097950 CGCATCTGATTAGCTAGTTTGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTGGT 1098009 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| |||||||||| | |||||||||| ||| |||| |||||||||||| Sbjct 1098010 CCAAGAGGATGATCAGCCACATTGGGATTGAGACACGGCCCAGACTCTTACGGGAGGCAG 1098069 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || |||||||| || | |||||||| ||||||||| ||||| || ||||| | || Sbjct 1098070 CAATGGGGAATTTTCCGCAATGGGCGAAAGCCTGACAGAGCAATGCTGCGTGGAGGTAGA 1098129 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| ||||||| || ||| ||||| ||||| |||||||||| || ||| Sbjct 1098130 AGGCCTATGGGTCGTGAACTTCTTTCCTCGGAGAAGAAGAAATGACGGTATATGGGGAAT 1098189 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||| |||||||||||| ||| || |||||||| | Sbjct 1098190 AAGCGTCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATGCAAGCGTTATTTG 1098249 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | ||||||||| || |||||||| || |||||| Sbjct 1098250 GAATGA-TTGGGCGTAAAACGTTTGTAGGTGGCTTTTTAAGT 1098290 >seq6319 Length=5966559 Score = 107 bits (118), Expect = 6e-21 Identities = 112/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||| || ||| |||| | ||||| |||| | | Sbjct 2285865 GCGTCTGATTAGCTAGTTGGTGAGGCAATATATTATTAAGGTTATGATCATTAGCTGGTC 2285806 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC-GGGAGGCAG 279 || | |||| |||||| ||| |||||||||||| | | |||||||| || |||||| Sbjct 2285805 CAAGGAGATGATTAGCCACACTGGGACTGAGACACGGCCTAGACTCCTACAGGAAGGCAG 2285746 Query 280 CAGTGGGGAATATTGCACAATGGGCA 305 | ||||||||| || ||||||||| Sbjct 2285745 CGGTGGGGAATTTTTTGCAATGGGCA 2285720 >seq2501 Length=2328915 Score = 104 bits (114), Expect = 7e-20 Identities = 94/117 (80%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||| ||| || ||||||| ||| ||||||||||| Sbjct 965308 GGATGATCAGCCACACTGGGGCTGAGATGCGGCCCGGACTCCTATGGG-GGCAGCAGTGG 965250 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||||| || |||| ||||||||||| ||| |||||| |||||||| || ||||| Sbjct 965249 GGAATGTTCGACAACGGGCAAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGG 965193 >seq676 Length=1051120 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 ||||| |||||||||||||| ||| || |||||||||| ||| ||||||||| Sbjct 374621 CGTCTAATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGTCGATGATCAGTAGTTAGTGG 374562 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACAC 255 |||||| ||||| |||||||| | | |||||||| Sbjct 374561 GAGAGGATGATCAGCCACATTAGGATTGAGACAC 374528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497339342720