Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3016 264 3e-68 seq1932 196 1e-47 seq4810 100 7e-19 >seq3016 Length=869763 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 736044 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 735985 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 735984 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 735925 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 735924 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 735865 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| || || | | |||||||| |||||| Sbjct 735864 GAGGGAATTTCCGGTGGAGCGGTGAAATGCACTGAGATCGGAAAGAACACCAACGGCGAA 735805 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 735804 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 735745 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 735744 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 735686 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 735685 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 735641 >seq1932 Length=4064500 Score = 196 bits (216), Expect = 1e-47 Identities = 288/405 (71%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||| |||||||||||| ||| || ||| Sbjct 1098182 TGGGGAATAAGCGTCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATGCAAGC 1098241 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||| ||||| | |||||||||| || |||||||| || |||||| | || ||| Sbjct 1098242 GTTATTTGGAATGATTGGGCGTAAAACGTTTGTAGGTGGCTTTTTAAGTTCGCCGTCAAA 1098301 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||||| || || | |||||| | ||| |||| | | | ||||| Sbjct 1098302 TCCGAGAGCTCAACCCTGGATAGGCGGTGGAAACTACCAAGCTGGAGTACGGCAAGGGCA 1098361 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| || || | | |||||| | ||| || Sbjct 1098362 TAGGGAATTTCCGGTGGAGCGGTGAAATGCACTGAGATCGGAAAGAACACTAACGGCAAA 1098421 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || | ||| | | |||||||||||| | ||||| ||||||| || ||||| Sbjct 1098422 AGCACTCTATTGGGCCGACACTGACACTGAGAGACAAAAGCTAGGGGAGCGAATGGGATT 1098481 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| |||||| || ||||| |||| ||| |||| || |||||| | | Sbjct 1098482 AGATACCCCAGTAGTCTTAGCTGTAAATGATGGATATTAGGCGT-TATGCGCATCGACTC 1098540 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | | | |||||| ||||||| || ||||||||||| Sbjct 1098541 GTGCAGTGCTGTAACTAACGCATTAAGTATCCCGCCTGGGGAGTA 1098585 >seq4810 Length=5543293 Score = 100 bits (110), Expect = 7e-19 Identities = 173/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 96 GTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGA 155 |||||||| || ||||| | || ||| | |||||||||| ||| | | || Sbjct 2720604 GTAGGTGGCTTTATAAGTTCGCCGTCAAATCCCTGGGCTCAACCCTGGGCAGACAGTGGA 2720545 Query 156 AACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCG 215 |||| | ||| |||| ||| ||||| | |||||| | ||| ||| |||||||| Sbjct 2720544 AACTACCAAGCTGGAGTACAGCAGGGGAAGCGGGAATTTCCGGTGGAGCAGTGAAATGAA 2720485 Query 216 TAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAG 275 ||| ||| | | |||||||| | | |||||| || || ||||| ||| Sbjct 2720484 CAGAGATTGGAAAGAACACCAA---CTA--------TGCTGGGTTGACACCGACACCGAG 2720436 Query 276 GCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 335 ||||||| ||||||| || ||||||||||||| ||||||| || ||| | ||| Sbjct 2720435 AGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCTGTAGAGGAT 2720376 Query 336 GAATACTAGGTG 347 | |||||||||| Sbjct 2720375 GGATACTAGGTG 2720364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202990583040