Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5054 306 7e-81 seq2977 300 3e-79 seq1026 300 3e-79 seq2945 297 4e-78 seq471 219 8e-55 seq2534 129 1e-27 >seq5054 Length=11143 Score = 306 bits (338), Expect = 7e-81 Identities = 260/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || ||| | ||| || ||| Sbjct 7721 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACGCCTCCACGG----CCAGCT 7776 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 7777 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 7835 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 7836 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 7895 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| || | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 7896 CTTGGCCGACGGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 7954 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 7955 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 8014 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 8015 CGTCCCTGCCCTTTGTA 8031 >seq2977 Length=12861 Score = 300 bits (332), Expect = 3e-79 Identities = 227/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 5263 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 5321 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 5322 TCTATGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 5381 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| || | |||||||||| | ||| | ||||| |||||||||| Sbjct 5382 CTATAGCCTTGGCCGACGGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 5440 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 5441 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 5500 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 5501 TTGACTACGTCCCTGCCCTTTGTA 5524 >seq1026 Length=119729 Score = 300 bits (332), Expect = 3e-79 Identities = 227/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 6750 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 6692 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 6691 TCTGTGATCCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 6632 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| || | |||||||||| | ||| | ||||| |||||||||| Sbjct 6631 CTATAGCCTTGGCCGACGGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 6573 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 6572 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 6513 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 6512 TTGACTACGTCCCTGCCCTTTGTA 6489 >seq2945 Length=173978 Score = 297 bits (328), Expect = 4e-78 Identities = 258/317 (81%), Gaps = 14/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || ||| | ||| || ||| Sbjct 137474 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACGCCTCCACGG----CCAGCT 137419 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||| ||| Sbjct 137418 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTATGA 137360 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||||||||||||| |||||||||||| | | |||||||| || | Sbjct 137359 TGCCCTTAGATGTTCTGGGCCGCATGCGCGCTACACTAATGTATTCAACGAGTCTATAGC 137300 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 137299 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 137241 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 137240 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 137181 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 137180 CGTCCCTGCCCTTTGTA 137164 Score = 295 bits (326), Expect = 1e-77 Identities = 226/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 102348 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 102290 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 102289 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 102230 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| || | |||||||||| | ||| | ||||| |||||||||| Sbjct 102229 CTATAGCCTTGGCCGACGGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 102171 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||| Sbjct 102170 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGCG 102111 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| |||| |||||||||||||| Sbjct 102110 TTGACTACGCCCCTGCCCTTTGTA 102087 >seq471 Length=9362 Score = 219 bits (242), Expect = 8e-55 Identities = 206/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 2908 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 2965 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||| ||| | || || || | Sbjct 2966 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGAAGGTATCAGCGTGTCCT--- 3022 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 3023 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 3082 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 3083 AAATTGTTCCCCATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 3142 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 3143 ACGTCCCTGCCCTTTGTA 3160 >seq2534 Length=3965412 Score = 129 bits (142), Expect = 1e-27 Identities = 194/272 (71%), Gaps = 9/272 (3%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||| | ||||||||| | ||| ||| | ||||| ||||| |||||||| Sbjct 257883 GTGGCCAGCTTCTCAAAGGGACTATGGCTGCTTAAGTCT-TGGAAATTTGACGCAATAAC 257825 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||| |||||||| ||| ||||| | ||| |||||| | ||| | Sbjct 257824 AGGTCTGTGATGCATATAGATGTTTTGGACCGCAAGTGCGTTACACTAATGTGTTCAATG 257765 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || || ||| | | || | |||||| | ||| | | ||||| ||| | Sbjct 257764 AGTCTATAGTTTTAACCGACATGCCTAAGCAATCTT-TAAAATTTTATCGTGATGGAATT 257706 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 | | ||||||| || | ||||||| ||||||| || | | || ||| ||||| || | Sbjct 257705 AAACCATTGCACTTTATTATCTTCAATGAGGAATTCCCAATGAGAGCGACTCATCGGCTC 257646 Query 302 GCGT-----TGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||||||| ||||||||||| Sbjct 257645 ACGTTGCAGTGACTACGTCCATGCCCTTTGTA 257614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947035139840