Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1090 102 3e-19 >seq1090 Length=2729200 Score = 102 bits (112), Expect = 3e-19 Identities = 111/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 |||||||| || | | |||| | ||||||||||||| ||||||| ||| | | || | Sbjct 13843 CGAGAGGAAAACAGTTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAAT--AATAA 13900 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || || ||| |||||||||||| ||| || | |||||||||| | || |||| Sbjct 13901 AGGAGGTAAGAGTGCAGAGACAGCTAGGACGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 13959 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| | |||||| ||||| Sbjct 13960 AGTGCGTAATAACTCACTTATCGAG 13984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689305925120