Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq546 86.0 1e-14 seq16670 80.6 5e-13 >seq546 Length=705657 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||| ||| |||| || || ||||||| |||||||||| |||||| ||| Sbjct 164009 CTGAATCCATGAGTAGGCAAGAGACTACCCGGCGAATTGAAACATCTCAGTAGCCAGAGG 164068 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||| ||| | |||||| ||||| ||||| ||||||||| ||||| Sbjct 164069 AAAAGAAAGCAAAAGCAATTCCCTTAGTAGCAGCGAGTGAAATGGGAGCAGCCT 164122 >seq16670 Length=793 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| Sbjct 624 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 565 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 564 GGCGAGCGAGAGCGGAT 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918240152480