Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2440 116 1e-23 seq6212 113 2e-22 seq3769 102 3e-19 seq541 100 1e-18 seq2507 78.8 3e-12 >seq2440 Length=3503224 Score = 116 bits (128), Expect = 1e-23 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2357041 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 2357100 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||| | || |||| || ||||||| || Sbjct 2357101 CATTATAGTTATGATCGTCGTTCACCTGGGCTTCGAT 2357137 >seq6212 Length=287107 Score = 113 bits (124), Expect = 2e-22 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 20240 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 20299 Query 446 GGTTATAGTTAC 457 ||||||||||| Sbjct 20300 CGTTATAGTTAC 20311 >seq3769 Length=582136 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | ||||||| | || ||||||||||||||||||||||| ||| |||||||| Sbjct 411298 TCGTTACGTCTTTCGTGCTGATCAGAACTTACCCGACAAGGAATTTCACTAGCTTAGGAT 411357 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGC 476 || |||||||| ||||| || ||||||| Sbjct 411358 TGTCATAGTTACGGCCGCCATTCGCTGGGGC 411388 >seq541 Length=235885 Score = 100 bits (110), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| || |||| ||| ||||||||||||||||| |||||| ||||||||||| Sbjct 46386 TCGTTACGCCTTTTGTGCGGGTTGGAACTTACCCGACAAGAAATTTCCCTACCTTAGGAC 46445 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| | ||| || |||||||| | | || ||| || ||| Sbjct 46446 TGTTATAGTTACAGTCTTCGTCCACCGGGGCTTCGA-TCGTCGACTC-----CCTCGTCA 46499 Query 506 TGTGCTCA-CGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | ||| | | | | ||| ||||||| ||| ||||| ||||||| || |||| Sbjct 46500 TCAGGTCATCAACTTC-CTTGACCTTCCGACACAGGGCAAGCGTCAGCCCCCATAC 46554 >seq2507 Length=3123735 Score = 78.8 bits (86), Expect = 3e-12 Identities = 99/135 (73%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || || | | || Sbjct 2468091 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 2468032 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| |||||||||||| ||||||||| | | ||||||| ||||| | Sbjct 2468031 GGAAACCTTTGCACGCCTCCGTTACCCTTTGGGAGGCCTA-CGCCCCATAGAAACTGTCT 2467973 Query 132 ACCAGGCACTGTCCC 146 ||| | |||||||| Sbjct 2467972 ACCTGAGACTGTCCC 2467958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702103697280