Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2945 100 5e-19 seq1026 100 5e-19 seq2977 95.1 2e-17 seq1080 78.8 2e-12 >seq2945 Length=173978 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 133242 GTACGAGAGGAACCGTTGA-TTC-GCACATTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 133185 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 133184 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 133131 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 166952 GTACGAGAGGAACCGTTGA-TTC-GCACATTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 166895 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| || ||||||||||||||||||||| Sbjct 166894 GGCGCGAAGCTACCGTGCGCTGGATTATGACTTAACGCCTCTAAGTCAGAATCC 166841 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 97798 GTACGAGAGGAACCGTTGA-TTC-GCACATTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 97741 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||| | | ||||||||| ||||| ||||||||||||||| Sbjct 97740 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAATTCCTCTAAGTCAGAAT 97689 >seq1026 Length=119729 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 2684 GTACGAGAGGAACCGTTGA-TTC-GCACATTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2627 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 2626 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2573 >seq2977 Length=12861 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 9328 GTACGAGAGGAACCGTTGA-TTC-GCACATTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 9385 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| ||||||||||||||||||||| || Sbjct 9386 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAACCC 9439 >seq1080 Length=4942101 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||||| || ||| | | | ||||| | || || ||| || |||| Sbjct 3777243 GTACGAAAGGAACCATTGA-TTC-GCACATTTGGTCATCGCACTTGGTTGAAAAGCCAGT 3777300 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| |||||||||||| ||| |||||||||||||||||||| Sbjct 3777301 GGCGCGAAGCTACCGCATGCTGGATTATGACTG-ACGCCTCTAAGTCAGAATCC 3777353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819061873920