Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5054 609 7e-172 seq2977 609 7e-172 seq2945 609 7e-172 seq471 425 2e-116 seq4617 291 2e-76 seq2940 165 2e-38 seq7723 145 2e-32 seq2386 77.0 1e-11 >seq5054 Length=11143 Score = 609 bits (674), Expect = 7e-172 Identities = 448/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 6916 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 6858 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6857 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6798 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| Sbjct 6797 TCTCAGGCTCCCTCTCCGAAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 6738 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 6737 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCGGCA 6678 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | | |||| |||||| ||| ||||||| |||||||| || |||| || ||| | Sbjct 6677 CGATGGCCGTGCGATCCGTCAAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 6620 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 6619 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 6560 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 6559 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 6501 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 6500 TTTAATGAGCCATTCGCAGTTTCACCGTCTGAATTAGTTCATACTTACACATGCATGGCT 6441 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 6440 TAATCTTTGAGACAAGCATATGACTACTGGCAG 6408 >seq2977 Length=12861 Score = 609 bits (674), Expect = 7e-172 Identities = 448/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 4409 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 4351 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4350 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 4291 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 4290 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 4231 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 4230 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCGGCA 4171 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | | |||| |||||| ||| ||||||| |||||||| || |||| || ||| | Sbjct 4170 CGATGGCCGTGCGATCCGTCAAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 4113 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 4112 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 4053 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 4052 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 3994 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 3993 TTTAATGAGCCATTCGCAGTTTCACCGTCTGAATTAGTTCATACTTACACATGCATGGCT 3934 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| ||||||||||||||||||| Sbjct 3933 TAATCTTTGAGACGAGCATATGACTACTGGCAG 3901 >seq2945 Length=173978 Score = 609 bits (674), Expect = 7e-172 Identities = 448/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 103426 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 103484 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103485 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 103544 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| Sbjct 103545 TCTCAGGCTCCCTCTCCGAAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 103604 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 103605 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCGGCA 103664 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | | |||| |||||| ||| ||||||| |||||||| || |||| || ||| | Sbjct 103665 CGATGGCCGTGCGATCCGTCAAGTTATCATGAATCATCA--GAGCAACGGGAAAAGCCCG 103722 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 103723 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 103782 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 103783 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 103841 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 103842 TTTAATGAGCCATTCGCAGTTTCACCGTCTGAATTAGTTCATACTTACACATGCATGGCT 103901 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 103902 TAATCTTTGAGACAAGCATATGACTACTGGCAG 103934 >seq471 Length=9362 Score = 425 bits (470), Expect = 2e-116 Identities = 413/523 (79%), Gaps = 20/523 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| ||||||| ||||| | || | | ||| || ||||| ||| | | ||||||||| Sbjct 1976 GTAGTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATCTTTCGTCACTACC 1917 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 TCCCCGAGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1857 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1856 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 1797 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | |||||||| Sbjct 1796 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGC 1737 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAG------GAGCCCCGAA 290 | ||||| |||||| | |||||||| || |||||||| || ||||| Sbjct 1736 ACGGAGGCCGTGCGATCAGCCCAAAGTTATTCAGAGTCACCAAGTTAGACGATGGCCGAA 1677 Query 291 --GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG----AAGTCGGG--GTTTTT 342 || | | |||| |||||||||| | |||||||| |||||| | || Sbjct 1676 ACCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCGTCTCCGGTCGGGACTCTGTT 1617 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAA 401 |||||||||||||| || ||| || | ||||||||||| | | | |||| ||| | | | Sbjct 1616 GGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCATGTAACTGAAGTACGATCTATTGA 1557 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||||||||| ||||||||| | ||| ||||||| || | | |||| |||||||| Sbjct 1556 ACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTA-ATTTGGCTTGCACTTAGAC 1498 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1497 ATGCATGGCTTAATCTTTGAGACAAGCATATGATAACTGGCAG 1455 >seq4617 Length=312586 Score = 291 bits (322), Expect = 2e-76 Identities = 259/315 (82%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCG 257 |||||||||||||||| | |||||| ||| | |||||||| | | |||| |||||| || Sbjct 304895 GAAAGTTGATAGGGCAAATATTTGACTGATGCGTCGCCGGCACGATGGCCGTGCGATCCG 304836 Query 258 TTAAGTTATTATGAATCACCAAGGAGCCCCG----AAGGGC--GTTGGTTTTTTATCTAA 311 | ||||||| |||||||| || |||| || ||| | || | |||||||||| Sbjct 304835 TCAAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCACGTCGACCTTTTATCTAA 304778 Query 312 TAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACG 370 ||||| || ||||||| |||||| |||||| | ||| ||||||||||||||||||| ||| Sbjct 304777 TAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACG 304718 Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||||||| |||| | | ||| |||||| |||| |||| ||||||||||||||||||||| Sbjct 304717 GTTATCCGAGTAGCA-GATACCATCAAACAAACTATAATTGATTTAATGAGCCATTCGCA 304659 Query 431 GTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||| ||| || | ||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 304658 GTT-CACCGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCA 304600 Query 490 TATGACTACTGGCAG 504 ||||||||||||||| Sbjct 304599 TATGACTACTGGCAG 304585 >seq2940 Length=747359 Score = 165 bits (182), Expect = 2e-38 Identities = 121/138 (88%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| ||||||||||| |||||| | | | |||||| |||| ||||| Sbjct 632385 ATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTA-GATTCCATCAAACAAACTATAAC 632443 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATG 468 | |||||||||||||||||||||||||| || | ||| | | ||||||| ||||||||| Sbjct 632444 TAATTTAATGAGCCATTCGCAGTTTCACCGTTTGAATTAGTTCATACTTACACATGCATG 632503 Query 469 GCTTAATCTTTGAGACAA 486 |||||||||||||||||| Sbjct 632504 GCTTAATCTTTGAGACAA 632521 >seq7723 Length=208 Score = 145 bits (160), Expect = 2e-32 Identities = 109/127 (86%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 82 GTTCTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 141 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 TCCCCGTTCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 201 Query 120 TTCTCAG 126 ||||||| Sbjct 202 TTCTCAG 208 >seq2386 Length=808 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 808 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510137114880