Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4399 199 3e-46 >seq4399 Length=3202280 Score = 199 bits (220), Expect = 3e-46 Identities = 392/575 (68%), Gaps = 5/575 (1%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| ||||| || | ||| |||||||| |||||||| || ||||||| Sbjct 384615 TGTTCCCAATCAAGTATCCCGAGGTGTGGGAAATGTACAAGAAGGCGGAGGCCTCCTTCT 384556 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| ||||||||| || | ||| | |||| |||||||| | || | || Sbjct 384555 GGACGGCGGAGGAGGTGGACCTCTCCCAGGACACCCGCCACTGGGAGAATCTAACCTCCG 384496 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | |||||| | | ||| | | || ||||| ||||| || ||||| |||||| Sbjct 384495 GCGAGCGCCATTTCGTCACCCATATCCTCGCTTTCTTCGCCGCCTCTGACGGGATCGTCC 384436 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||| | | || ||| | ||||||| || | || ||||| || |||| Sbjct 384435 TCGAGAACCTCGCCGCCCGGTTCATGAAGGAGGTCCAGATCTCCGAGGCCCGCGCCTTCT 384376 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | ||||||||||| ||||| ||||| ||||||| |||||||||||| | ||| |||| | Sbjct 384375 ATGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGTCTGCTCCTCGAGA 384316 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 | ||||||| ||| || || || || ||||| || |||||||| | || Sbjct 384315 CCTACATCAAGGACTCCGCCGAGAAGGACCGCCTGTTCCGGGCGATCGAGACCGTCCCCT 384256 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 |||||| ||| ||||| |||||| | | |||||| | | | || | | || | Sbjct 384255 GCGTGAAGAAGAAGGCGGAGTGGGCCATGCAGTGGATCGACGG--CTCCGAGT-CGTTCG 384199 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCC 61542 || | || | |||||||| || ||||| | || ||| ||| | | || Sbjct 384198 CGGAGAGGGTGATTGCATTTGCCTGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTG-T 384140 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 || ||||| ||| ||||||| || || || ||||| || || |||||| || ||| || Sbjct 384139 GCCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTG 384080 Query 61603 ATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || || | |||||||| | || || || || || Sbjct 384079 ATCTCGAGGGACGAGGGACTCCACTGCGACTTCGC 384045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397483666509200