Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2507 176 5e-39 seq4293 111 2e-19 seq6319 105 7e-18 seq3240 93.3 5e-14 seq2492 84.2 2e-11 seq4399 82.4 8e-11 >seq2507 Length=3123735 Score = 176 bits (194), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || ||||| || || ||||| || ||||| || || |||||||| ||||||||||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 ||||||||||||||||| ||||||||||| ||||| ||||| || |||||| ||||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| |||| | ||||| || ||||| ||| || ||||||| ||||| ||||| || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 162514 AGAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 2652107 CGTGGAAACGCTCT-TTAATGG 2652087 >seq4293 Length=5823730 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 160640 AATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAAC 160699 || || ||||||||||| |||||||| | | | || | ||||| | || | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 160700 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAAC 160759 |||||||| || | |||||||||||| || || |||||||| ||||| || ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 160760 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 160790 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq6319 Length=5966559 Score = 105 bits (116), Expect = 7e-18 Identities = 126/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 160367 GTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTC 160426 |||||||| || || || ||| |||||||||||| || |||| || |||||| | || Sbjct 1421242 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATC 1421183 Query 160427 AGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAG 160486 || || || ||||||| ||| | || | ||||||| ||||| ||||||||||| Sbjct 1421182 AGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAGAA 1421123 Query 160487 ACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCA 160536 ||||| || ||||| || || ||||| || ||| ||||| |||||| Sbjct 1421122 ACTTATAATATCGTAGCTGCTCATGGTTA-TTC-----TTTGACCTTCCA 1421079 >seq3240 Length=2626545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 160598 GGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAAC 160657 || |||||||| ||||| | ||| | || ||||| ||||| || ||||||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 160658 TTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTT 160717 |||||||| || | | || | ||||| | || | || |||||||| || | || Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 160718 AACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAA 160758 ||||||||| || || |||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq2492 Length=5361119 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 161788 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTC 161847 ||| | || || || |||| |||||| || |||||||| ||||||| || || || ||| Sbjct 375424 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTC 375483 Query 161848 ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGC 161906 ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| || || Sbjct 375484 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 375542 >seq4399 Length=3202280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 160697 AACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGT 160756 || |||||||| || | ||||||||| | || || |||||||| ||||| || ||| Sbjct 214274 AATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGT 214215 Query 160757 AACGCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 || ||||| ||||||||||| ||||| |||||| Sbjct 214214 AATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551256041259000