Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3240 141 1e-28 seq4293 129 7e-25 seq4399 100 4e-16 seq2507 93.3 5e-14 seq6319 87.8 2e-12 >seq3240 Length=2626545 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 189646 GGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAAC 189705 |||||||||||||| || | || ||||||| ||||| |||||||| ||||| ||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 189706 TTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTC 189765 ||||| ||||| | ||||| ||||||||||||| | || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAA 189806 ||||| ||| |||||||||||||| |||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 189688 AACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAAC 189747 ||||| ||||| ||||| ||||| |||| | ||||| ||||||||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 189748 ACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAAC 189807 || ||||| || |||| ||||| ||| |||||||||||||| |||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 189808 GCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||| ||||||||||| || || || || Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGC 2155108 >seq4399 Length=3202280 Score = 100 bits (110), Expect = 4e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 189722 TTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTG 189781 ||||| ||||||||||||| | || || ||||| || || | ||||| | | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 189782 GTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 |||||||||| |||||||| ||||| ||||| ||||||||||| || || || || Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 214183 >seq2507 Length=3123735 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 190497 TTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATC 190556 || || || || ||||| ||||| ||| ||| || || |||||||| ||||| ||| | Sbjct 2014076 TTCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTA 2014017 Query 190557 CTGGGAGGAGCA---CTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTAT 190613 |||| | || ||||| | || |||||||||| || |||| |||||| | | | Sbjct 2014016 TTGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTT 2013957 Query 190614 GAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACC 190673 ||||||||||| ||||| || || || || || | || |||| ||| | || Sbjct 2013956 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACT 2013897 Query 190674 TATTCGATGGTCACTGCCAA 190693 ||||| |||||||||| || Sbjct 2013896 TATTCAGTGGTCACTGCTAA 2013877 >seq6319 Length=5966559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 189413 GTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGG 189472 |||| ||||| ||||| || ||| || ||||||||||| | || |||||| || Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 189473 TTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG 189532 | | |||||||| |||| || | || | ||||||| || || ||||| |||| Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 189533 AAACGTACAACATCGTTGCTGCTCATGGATATT 189565 |||| || || ||||| ||||||||||| |||| Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTATT 1421092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633942047970000