Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2507 134 2e-26 seq4293 120 3e-22 seq3240 114 1e-20 seq4399 96.9 4e-15 seq6319 84.2 2e-11 >seq2507 Length=3123735 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 164682 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTG 164741 |||| ||| || |||| | ||||||| || || || || ||||| ||||| || || Sbjct 2652311 TGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTT 2652252 Query 164742 TCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATC 164801 || |||||||| | ||||| || |||||||||||||| || ||||| || || || || Sbjct 2652251 TCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATT 2652192 Query 164802 CTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTT 164861 ||| | || ||||| | ||||| |||||||| | ||| ||||| || ||| || Sbjct 2652191 CTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 2652132 Query 164862 GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 |||| |||||||| ||||| || | || ||||| || ||| Sbjct 2652131 ATATTCCCAGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 2652090 Score = 132 bits (146), Expect = 5e-26 Identities = 149/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 164398 TCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCC 164457 ||||||| || ||||| |||||| | | ||| || ||||||||||| ||||| || | Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 164458 TTGG---TGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTG 164514 | || || |||||| || || ||||| ||||||||||| |||| |||||| | |||| Sbjct 2014015 TGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 164515 AAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTT 164574 |||||||||| ||||||| ||| || || | || ||||||| ||| | |||| Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 164575 ACTCGATGGTCACTGCCAA 164593 | || |||||||||| || Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 161409 AACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 161468 ||||| || || ||||| |||||||| | | | ||| |||| || || | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 161469 ACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAAT 161528 || |||||||| |||| || || |||||||||||||||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 161529 GCTCACAACTTCCCTCTGGATCTCGCTGCTG 161559 ||||| ||||||||||| || || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 161367 GGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAAC 161426 ||||||||||| ||||| | ||| || ||| ||||| |||||||| || || ||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 161427 TTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTG 161486 |||||||| || | | ||| |||| || || | || || |||||||| || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 161487 AATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAA 161527 || || |||||||||||||||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 || || |||||||| || | || || | |||||||||||||||||| ||||| || ||| Sbjct 214274 AATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGT 214215 Query 161526 AATGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||| ||||||||||| || || |||||| Sbjct 214214 AATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq6319 Length=5966559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 161134 GTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGG 161193 |||| ||||| ||||| || ||| || ||||||||||| |||| || ||| || Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 161194 TTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAG 161253 | | |||||||| || || || | || | ||||||| || || ||||| |||| Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 161254 AGACCTACAACATCGTCGCTGCTCATGGTTA 161284 | || || || ||||| |||||||||||||| Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTA 1421094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559206311202000