Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1008 98.7 1e-18 seq462 98.7 1e-18 seq294 98.7 1e-18 seq751 82.4 1e-13 seq494 73.4 5e-11 >seq1008 Length=138720 Score = 98.7 bits (108), Expect = 1e-18 Identities = 132/181 (73%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| |||| |||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 45637 CCTTCCAGCACCAGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 45579 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | || |||| | Sbjct 45578 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTGC--TTTCCTAATCAAAAGA 45521 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || ||| |||||||||||||||||||||| ||||||||| | ||||| Sbjct 45520 T--------AGGAG-AGCATCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCAAGTTCCT 45470 Query 186 T 186 | Sbjct 45469 T 45469 >seq462 Length=363964 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||| ||||||||||||||| |||||||||||||||| ||||| | || |||| | | Sbjct 240138 GCACCCTTTCTCCCGAAGTTACAGGGCCATTTTGCCGAAGTCCTTCAACATGGTTCTCTC 240079 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | |||||| |||||| || ||||| ||| ||||| |||| Sbjct 240078 AAGCGTCCTAGTATACTCTACTTGTTCACCTCTGTTGGTTTGGGGTA 240032 >seq294 Length=511472 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| |||| |||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 434657 CCTTCCAGCACCAGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 434715 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | || |||| | Sbjct 434716 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTGC--TTTCCTAATCAAAAGA 434773 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || ||| |||||||||||||||||||||| ||||||||| | ||||| Sbjct 434774 TAGGACA---------GCATCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCAAGTTCCT 434824 Query 186 T 186 | Sbjct 434825 T 434825 >seq751 Length=207695 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||||||||||||| ||| ||||| | ||||||||| | |||| | || | Sbjct 34706 CCCTTCTCCCGAAGTTACGAGGCTATTTTTTCAAATTCCTTAGAGAGAGTTGTCTCGCGC 34647 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||||||||||| |||||| ||| ||||| |||| Sbjct 34646 CCCTAGGTATTCTCTACCTAGCCACCTATGTTGGTTTCTGGTA 34604 >seq494 Length=342502 Score = 73.4 bits (80), Expect = 5e-11 Identities = 67/83 (81%), Gaps = 4/83 (5%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| ||||| |||||||||| ||||||| | |||| Sbjct 103096 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTA--GAGAGTT--GT 103151 Query 201 CGAACGCCTTAGTATTCTCTACC 223 | | | ||| |||||||||||| Sbjct 103152 CTAGCTCCTAGGTATTCTCTACC 103174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694385321686