Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1029 176 1e-41 seq703 131 5e-28 seq495 107 6e-21 seq1365 102 2e-19 seq853 100 9e-19 seq654 98.7 3e-18 seq760 95.1 4e-17 seq202 91.5 4e-16 seq190 89.7 2e-15 seq29 78.8 3e-12 seq231 77.0 1e-11 >seq1029 Length=132028 Score = 176 bits (194), Expect = 1e-41 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35 GGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC 94 |||| |||||| ||||| |||||||||| ||||||||||| |||| | |||||||||||| Sbjct 32760 GGGGGCCCGCATAAGCGTTGGAGCATGTAGTTTAATTCGATGCAAAGTGAAGAACCTTAC 32701 Query 95 CAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGT 154 || |||||||| | || | || || | ||| | | || ||| || | || Sbjct 32700 CAGGGCTTGACATGCCACGAATCTTCCTGAAAGAGAAGGATGCC-TTCAGGAAAGCGAAC 32642 Query 155 GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA 214 | |||||| ||||||| |||||||||||| || ||| || |||||||||||||||||||| Sbjct 32641 G-CAGGTGGTGCATGGCTGTCGTCAGCTCATGCCGTAAGGTGTTGGGTTAAGTCCCGCAA 32583 Query 215 CGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAG 250 | ||||||||||||| | |||||||||| ||||| Sbjct 32582 CTAGCGCAACCCTTATGTTTAGTTGCCACAGTTAAG 32547 >seq703 Length=223500 Score = 131 bits (144), Expect = 5e-28 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 ||||||||||||||| || | |||||| ||| |||||||||||||| | |||||| | Sbjct 141973 AAATCATCATGCCCCCTACGCCTTGGGCAACATACGTGCTACAATGGCCGGAACAAAGAG 141914 Query 367 CAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC-GGATTGTAGTC 425 | | |||||| | ||| || ||| ||| || ||||||| |||||||| | Sbjct 141913 TCACAATCCCGCGATGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTTTGGATTGTAAGC 141854 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC-AGCATGCTACGGTG 484 |||||| || ||| |||||||||||||||||| ||||| | | || | ||| | |||||| Sbjct 141853 TGCAACACGCCTACATGAAGCTGGAATCGCTAATAATCATCGGTCAACCATACGACGGTG 141794 Query 485 AATACGTTCCC 495 ||| |||||| Sbjct 141793 AATTTGTTCCC 141783 >seq495 Length=340936 Score = 107 bits (118), Expect = 6e-21 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 55 GAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGA 114 ||| ||||||||| |||| | |||| | ||||||||||||| |||||||| || | Sbjct 53716 GAGTATGTGGTTTCATTCAATGCAAAACAAAGAACCTTACCAGGACTTGACATACTGCAA 53657 Query 115 CCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGT 174 ||||| || | ||||| | || |||| | || ||| || ||||| ||||| Sbjct 53656 ATCCTCTTGA-AGAGAGGAGTACC-TTCGAGAACTCGAC--ACAAGTAGTGCATAGTTGT 53601 Query 175 CGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 |||||||||||| | | || ||||||||||||||||||||||||| Sbjct 53600 CGTCAGCTCGTGCCATAAGGTGTTGGGTTAAGTCCCGCAACGAGC 53556 >seq1365 Length=65459 Score = 102 bits (112), Expect = 2e-19 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 2346 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 2405 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| | ||| |||||||||||| | ||||| ||| ||| | | | |||| | Sbjct 2406 GGCTGGGCCATACATGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGTGGA 2465 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTC 414 || ||| || |||| | |||||||| Sbjct 2466 GCGAAT-CCGGAAAGATTGCCTCAGTTC 2492 >seq853 Length=171453 Score = 100 bits (110), Expect = 9e-19 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 49 GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 || ||||| |||||| |||||||||| |||| ||||| |||||||||| |||||||| Sbjct 32923 GCAGTGGAACATGTG-TTTAATTCGATGCAAAGCGAATAACCTTACCAGGGCTTGACATG 32981 Query 109 CTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCAT 168 | ||| ||||| || | || | | || || ||| || || ||||||| ||||| Sbjct 32982 CCGTGAATCCTCTTGAAAAAGGCGGGTGCCGTTTCGGGAACGCAGACACAGGTGGTGCAT 33041 Query 169 GGTTGTCGTCAGCTCGTGTCGTGAGAT 195 || |||| ||| ||||||| || |||| Sbjct 33042 GGCTGTCATCAACTCGTGTTGTAAGAT 33068 Score = 100 bits (110), Expect = 9e-19 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 49 GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 || ||||| |||||| |||||||||| |||| ||||| |||||||||| |||||||| Sbjct 138456 GCAGTGGAACATGTG-TTTAATTCGATGCAAAGCGAATAACCTTACCAGGGCTTGACATG 138398 Query 109 CTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCAT 168 | ||| ||||| || | || | | || || ||| || || ||||||| ||||| Sbjct 138397 CCGTGAATCCTCTTGAAAAAGGCGGGTGCCGTTTCGGGAACGCAGACACAGGTGGTGCAT 138338 Query 169 GGTTGTCGTCAGCTCGTGTCGTGAGAT 195 || |||| ||| ||||||| || |||| Sbjct 138337 GGCTGTCATCAACTCGTGTTGTAAGAT 138311 >seq654 Length=247815 Score = 98.7 bits (108), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 49 GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 || |||||||||||| |||||||||| |||| ||||| |||||||||| |||||||| Sbjct 117554 GCAGTGGAGCATGTG-TTTAATTCGATGCAAAGCGAATAACCTTACCAGGGCTTGACATG 117612 Query 109 CTCTGACCCCTCTAGAGATAG--AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGC 166 | ||| ||||| || | || ||| | || || ||| || || ||||||| ||| Sbjct 117613 CCGTGAATCCTCTTGAAAAAGGCAGG--TGCCGTTTCGGGAACGCAGACACAGGTGGTGC 117670 Query 167 ATGGTTGTCGTCAGCTCGTGTCGTGAGAT 195 | || |||| ||| ||||||| || |||| Sbjct 117671 ACGGCTGTCATCAACTCGTGTTGTAAGAT 117699 Score = 98.7 bits (108), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 49 GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 || |||||||||||| |||||||||| |||| ||||| |||||||||| |||||||| Sbjct 195461 GCAGTGGAGCATGTG-TTTAATTCGATGCAAAGCGAATAACCTTACCAGGGCTTGACATG 195403 Query 109 CTCTGACCCCTCTAGAGATAG--AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGC 166 | ||| ||||| || | || ||| | || || ||| || || ||||||| ||| Sbjct 195402 CCGTGAATCCTCTTGAAAAAGGCAGG--TGCCGTTTCGGGAACGCAGACACAGGTGGTGC 195345 Query 167 ATGGTTGTCGTCAGCTCGTGTCGTGAGAT 195 | || |||| ||| ||||||| || |||| Sbjct 195344 ACGGCTGTCATCAACTCGTGTTGTAAGAT 195316 >seq760 Length=204459 Score = 95.1 bits (104), Expect = 4e-17 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 ||||||||||||||||| ||||||| |||| |||||||| | || ||| | Sbjct 109246 CACACGTGCTACAATGGCTGGGACAAAGGATCGCGATCCCGCGAGGGTAGTTAACTCCAA 109187 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 ||| | | ||||||||||||||||| || ||| ||| ||| || |||| |||||| || Sbjct 109186 -AAACTCATCCTCAGTTCGGATTGTAGGCTACAATTCGCCTACATAAAGCCGGAATCACT 109128 Query 457 AGTAATCGTAGATCAG-CATGCTACGGTGAA 486 |||||||| |||| ||||| |||||| Sbjct 109127 AGTAATCGCCAGTCAGCCATGCGGTGGTGAA 109097 >seq202 Length=624202 Score = 91.5 bits (100), Expect = 4e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 |||| |||| ||| | || ||||||||||||| | || |||||||| |||| | |||| Sbjct 367150 ACAGATGATTCATAGCTGCTGTCAGCTCGTGTCTTAAGGTGTTGGGTCAAGTTTCACAAC 367209 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACT 270 || |||| ||||| | ||||||| ||||||||| || | |||||| | |||| Sbjct 367210 AAGTGCAATCCTTATGTTTAGTTGTCATCATTAAATTTGAAACTCTAGATAGACT 367264 >seq190 Length=654154 Score = 89.7 bits (98), Expect = 2e-15 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 |||| ||||||||||| || |||||||| ||| ||||||||||| | |||| | |||| Sbjct 182187 CAAGAATGAAACTCAAAAGATTTGACGGGAGCCCACACAAGCGGTGAATCATGCGATTTA 182128 Query 69 ATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATA 128 |||| | |||| || ||||| ||||| | ||| |||| || || ||||| || | Sbjct 182127 ATTCAATGCAAAGCAAAGAAACTTACTAGGGCTTAACATGCTAAGAATCCTCTTGAAAGG 182068 Query 129 GAGG 132 |||| Sbjct 182067 GAGG 182064 >seq29 Length=1383576 Score = 78.8 bits (86), Expect = 3e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 |||| | ||||||||| | |||||| |||||||||||||||||| |||||||||| Sbjct 192716 TTGTTCTTTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGG 192775 Query 478 TACGGTGAATACGTTCCC 495 | ||||||||| || ||| Sbjct 192776 TGCGGTGAATATGTACCC 192793 >seq231 Length=587281 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | | ||||||||||||||| | |||| | |||| |||||||| Sbjct 385414 GATTGCCAGTGAAATATTGGAGGAAGGTGGGGATGTA-TCAAGTTCACATGGCCCTTATG 385472 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 |||||| ||||| |||||||||||| | ||||| ||| ||| Sbjct 385473 GGTTGGGCCACACATGTGCTACAATGGCAATTACAATGGGAAGC 385516 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | | ||||||||||||||| | |||| | |||| |||||||| Sbjct 419868 GATTGCCAGTGAAATATTGGAGGAAGGTGGGGATGTA-TCAAGTTCACATGGCCCTTATG 419810 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 |||||| ||||| |||||||||||| | ||||| ||| ||| Sbjct 419809 GGTTGGGCCACACATGTGCTACAATGGCAATTACAATGGGAAGC 419766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503967182720