Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq1610 192 1e-46 seq1296 129 1e-27 >seq1610 Length=21838 Score = 192 bits (212), Expect = 1e-46 Identities = 276/389 (71%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 || |||||||| |||| | |||| ||||||||||||||||| |||||||| ||| Sbjct 5268 GATGGCACCGGGCCGGTCTTCTCCGGCGCGCTGTTCCCGTTCCTGTTTATCACCATCGCC 5327 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 |||||||| | || ||||||||||||||| | || ||||||||||| || ||| | Sbjct 5328 TGTGGCGCCATTTCAGGTTTCCATGCGCTGGTTTCGAGCGGCACCACGCCGAAATTGGTG 5387 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 | | || || ||| ||| | ||||| ||||||| ||||||||||| || || ||| Sbjct 5388 GAGCGCGAAAGTCATATCCGCTTTATCGGCTACGGCGCGATGCTGATGGAATCCTTTGTG 5447 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || ||||||||| || || ||| |||||| |||| || ||||| ||||| ||||||||| Sbjct 5448 GCGATCATGGCGCTGATTTGCGCATCGGTGCTTGATCCGGGCGTCTACTTTGCCATGAAC 5507 Query 242 AGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTGG 301 ||| || || | | |||||| |||| | | | |||| | | | ||| Sbjct 5508 TCCCCTGCCGCGCTGATTGGCACCACGGTGGAAAATGCGTCGCAGGTGATTAATGGCTGG 5567 Query 302 GGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCACC 361 || || | | ||||| ||| |||| | | |||| | | | |||| |||| |||| Sbjct 5568 GGGTTCGTGGTGACGCCCGAGATGCTGAGCGGCATTGCGCGCGACGTCGGCGAAAGCACC 5627 Query 362 ATCCTGGCACGTGCCGGCGGCGCGCCGAC 390 || || | ||||| || || || || || Sbjct 5628 ATTCTTTCGCGTGCTGGTGGTGCACCAAC 5656 >seq1296 Length=80039 Score = 129 bits (142), Expect = 1e-27 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 || || || || |||| ||||| || | || || || || || || || ||||| Sbjct 4541 GATGGAACGGGTCCGGTTTGGAAAGGGACATTATTTCCTTTTCTATTTATTACTATTGCT 4482 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 || || || || || ||||| ||||| | || | ||||| || ||||| || || | Sbjct 4481 TGCGGTGCCGTGTCTGGTTTTCATGCTTTAATTGCTTCGGGAACAACGCCTAAATTATTA 4422 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 |||| ||| | | |||| |||||||||||||| |||| ||| | ||||| || || ||| Sbjct 4421 GCCAATGAAACCGATGCGCGTTACATCGGTTATGGCGCTATGTTAATGGAATCATTTGTG 4362 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 || |||||||| | ||||| ||||| | ||||| || ||| | || || |||||||| Sbjct 4361 GCTATCATGGCACTAGTTGCTGCCTCTATCATTGAACCTGGCCTCTATTTTGCCATGAA 4303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161574653888