Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1422 168 1e-39 seq232 82.4 1e-13 seq362 78.8 1e-12 seq148 75.2 2e-11 >seq1422 Length=55013 Score = 168 bits (186), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48 ACTTAGCTTCCCAGCTATGCAC--TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCAT 105 |||| ||| ||||||| || || | |||| | ||||||| |||||||||| |||| | Sbjct 18273 ACTTGGCTACCCAGCT-TGTACCGTGGGCACAATAACTGGTACACCAGAGGTGCGTCCCT 18215 Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 |||| | ||||||||| | ||| || ||||| ||| || ||||||||| ||||| | Sbjct 18214 CCCGATACTCTCGTACGAGGGAAAGGTCCTCGCAATGCTCTTACGCCCACACTGGATATG 18155 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 ||||||| ||||| | || ||||||| |||||| ||| || ||||||| ||||||| Sbjct 18154 AACCGAACAGTCTCACAACATTCTGAATGCAGCTCACGTACCGATTTAATGAGCGAACAA 18095 Query 226 CCCA-ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||| || |||| |||||| || | || |||||||||||| Sbjct 18094 TCCAGACCCTTGGAACATACTACAGCCCTGGGTGGCGAAGAGCCGACATCG 18044 >seq232 Length=585341 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 175 GTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCT 234 ||||| | | ||||||||||| |||| ||| || |||||| |||||||| ||||| ||| Sbjct 24628 GTCTCACAATGTTCTGAACCCTGCTCACGTACCGCTTTAAGAGGCGAACAACCCAATCCT 24569 Query 235 TGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 ||| || |||| || |||| | | || ||||| ||||| Sbjct 24568 TGGAACATACTACAAGCCCATGTGGTGAAGAGCCAACATC 24529 >seq362 Length=446383 Score = 78.8 bits (86), Expect = 1e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 ||||| |||| ||||||||||||||||| | ||| || |||||||||||||||| |||| Sbjct 164253 GAACTATCTCATGACGTTCTGAACCCAGCCCACGTACCGCTTTAATGGGCGAACAACCCA 164312 Query 230 ACCCTTGG 237 || |||| Sbjct 164313 ACTATTGG 164320 >seq148 Length=784025 Score = 75.2 bits (82), Expect = 2e-11 Identities = 148/218 (68%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| ||||| |||| | || ||| | ||| | || | || | Sbjct 440940 CTTAGATGCTTTCAGCAAGTATCCGCTCCACATTTGGCTATCTAGCGTTTGATGTGGGTA 440999 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| ||| ||| || || | || | ||||||||||||| | | | |||| Sbjct 441000 CGATAACTGGTACACTAGAAGTGCGTACTTCTTGATCCTCTCGTACTAGGAAAAAGTCCT 441059 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| || ||| |||| ||| |||| |||| |||| ||||||||| Sbjct 441060 TGCAATACTCTAACGTCCACACTAAATATAGACCAAACTATCTCACGACGTTCT-----A 441114 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 ||| | | | | ||||||| ||| |||| |||||||| Sbjct 441115 AGCACACCTACATCTTTAACGGGGAAACAACCCAACCC 441152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780783495352