Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq222 131 5e-28 seq419 129 2e-27 seq1175 98.7 3e-18 seq318 91.5 4e-16 >seq222 Length=596275 Score = 131 bits (144), Expect = 5e-28 Identities = 104/124 (84%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250 |||||||||||| | |||||||| | | |||||||||| | ||||||||||| ||| Sbjct 283868 GCTTACCAAGGCAATAGTCAGTAGCTGGTCCGAGAGGGTGACCAACCACATTGGAATTGA 283927 Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 ||||||| ||||||||||||||||||||| |||| ||||| || || ||||| | ||||| Sbjct 283928 GACACGGGCCAAACTCCTACGGGAGGCAGTAGTGTGGAATTTTCCATAATGGAC-AAAGC 283986 Query 311 CTGA 314 |||| Sbjct 283987 CTGA 283990 >seq419 Length=401485 Score = 129 bits (142), Expect = 2e-27 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 159 CCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGA 218 ||||||| | ||||||||||||| ||| || |||||||||| || ||||||||| | Sbjct 130453 CCGCGTCCGGTTAGCTAGTTGGTGAGGCAATAGCTTACCAAGTTGATGATCAGTAGTTGG 130394 Query 219 CCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 |||||| ||||| |||||| ||| | |||||||||| | |||||||||| ||||| Sbjct 130393 TTCGAGAGGATGATCAGCCACACTGGGATCAAGACACGGTCTAGACTCCTACGGTAGGCA 130334 Query 279 GCAGTGGGGAATAT 292 |||||||||||||| Sbjct 130333 GCAGTGGGGAATAT 130320 Score = 129 bits (142), Expect = 2e-27 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 159 CCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGA 218 ||||||| | ||||||||||||| ||| || |||||||||| || ||||||||| | Sbjct 358239 CCGCGTCCGGTTAGCTAGTTGGTGAGGCAATAGCTTACCAAGTTGATGATCAGTAGTTGG 358298 Query 219 CCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 |||||| ||||| |||||| ||| | |||||||||| | |||||||||| ||||| Sbjct 358299 TTCGAGAGGATGATCAGCCACACTGGGATCAAGACACGGTCTAGACTCCTACGGTAGGCA 358358 Query 279 GCAGTGGGGAATAT 292 |||||||||||||| Sbjct 358359 GCAGTGGGGAATAT 358372 >seq1175 Length=99817 Score = 98.7 bits (108), Expect = 3e-18 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 446 ||||| ||| |||| | ||||||| ||||||||||| ||||||||| ||| | Sbjct 75454 ACTTGGGGAATAAGCATCAGCTAACTGTGTGCCAGCAGCTGCGGTAATATAGAGGATGTA 75395 Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||||||||| | | |||||||||| || |||||||| |||||||||| Sbjct 75394 AGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTCTTAAGTC 75342 >seq318 Length=487340 Score = 91.5 bits (100), Expect = 4e-16 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356 |||||||||||||| ||||| ||||| ||||||||| | |||| || | || || | Sbjct 396163 CAATGGGCAAAAGCTTGATGGAGCAATGCCGCGTGAAGGTAGAAGATCTACAAGTTGTGA 396104 Query 357 AGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC 414 | ||| | | | ||||| ||| | ||| || || ||| ||||||||| Sbjct 396103 ACTTCTTTTTCCGAAGAAGAAGCAATAATAGTATCTGGAGAAAAAGAATCGGCTAACTTT 396044 Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||| |||| | | |||||| ||| || |||||||||| ||| | | || ||||| Sbjct 396043 TTGCCCGCAGTCTCAATAATACAAAGGATGCAAGCGTTATCCCAAATGA-TTGGACGTAA 395985 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGTC 500 || || |||||||| || ||||||| Sbjct 395984 AGCGTTTGTAGGTGGCTTTTTAAGTC 395959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497567322368