Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1175 105 2e-20 seq703 87.8 4e-15 seq898 82.4 2e-13 seq402 77.0 8e-12 >seq1175 Length=99817 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||||| ||| |||| | ||||||| ||||||||||| ||||||||| ||| | Sbjct 75454 ACTTGGGGAATAAGCATCAGCTAACTGTGTGCCAGCAGCTGCGGTAATATAGAGGATGTA 75395 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 ||||||||||||||| | ||||||||||| || |||||||| |||||||||| Sbjct 75394 AGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTCTTAAGTC 75342 >seq703 Length=223500 Score = 87.8 bits (96), Expect = 4e-15 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||| |||| ||| ||||| | ||||| ||| |||| |||||| |||| | || | Sbjct 168535 GCTGGAGTACAGTAGGGGTAGAGAGAATTTTCGGTGAAGCGATGAAATACGTATAGATAA 168476 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | |||||||| || || || | |||||| ||| ||||||||| || |||||| Sbjct 168475 AAAAGAACACCAACGGTAAAAGCATCCTGCTGGGCTGACACTGACACTAAGAGACGAAAG 168416 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 | ||||||| |||||||||||| ||| | || |||||||||| ||||||| Sbjct 168415 CTAAAAGAGCAAATGGGATTAGATACCTCAATAGCTCTAGCAGTAAACGATGGATACTAG 168356 Query 345 G 345 | Sbjct 168355 G 168355 >seq898 Length=161915 Score = 82.4 bits (90), Expect = 2e-13 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| || |||| | | |||||||||| || || Sbjct 71803 AGTGGAATTTCATGTGTAGGGGTGAAATCCGAAGATCTACGAAGGAACACCAAAAGCTAA 71862 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| | | |||| |||||| ||| | |||||| |||||| ||||| ||||| Sbjct 71863 GGCAGTTGTCTGGGTCCCTACTGACGCTGGAGTGTGAAAGCATGGGGAACAAACTGGATT 71922 Query 305 AGATACCCTG 314 |||||| ||| Sbjct 71923 AGATACACTG 71932 >seq402 Length=409585 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || ||| ||| | |||||||||| ||||||| ||||| |||| |||||||||||| Sbjct 331458 TGTTGGGCTGACATTGACACTGAGAGACGAAAGCTAGGGGATCAAATGGGATTAGATACC 331517 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATAC 341 | ||||||| |||| |||||||| |||| Sbjct 331518 CCAGTAGTCCTAGCCGAAAACGATGGATAC 331547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203173746176