Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1330 149 5e-31 seq801 149 5e-31 seq202 138 9e-28 >seq1330 Length=73179 Score = 149 bits (164), Expect = 5e-31 Identities = 398/595 (67%), Gaps = 15/595 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 26189 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 26248 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||||| ||||||| |||| || Sbjct 26249 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACG 26308 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| || || || || || |||||| Sbjct 26309 GCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCC 26368 Query 61244 ATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||| ||| | ||| | |||| | ||||||| || || | ||||| || ||| Sbjct 26369 TTGAAAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 26427 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| ||||| ||||| ||||||| ||||||||||| | || |||| Sbjct 26428 TACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 26487 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 |||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 26488 ACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC 26546 Query 61422 GGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | | | || | | Sbjct 26547 --CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGG--CTCCGAGT-CT 26601 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 || | || ||| | |||| ||||| || ||||| | || ||| | ||| | Sbjct 26602 TTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTC 26661 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | || || || || | ||||| || ||||| ||| ||| || Sbjct 26662 TG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 26720 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC--TATTCA 61651 | |||| || || ||||||||| |||| || || || || ||||| |||||| Sbjct 26721 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTCA 26775 Score = 149 bits (164), Expect = 5e-31 Identities = 398/595 (67%), Gaps = 15/595 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 46991 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 46932 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||||| ||||||| |||| || Sbjct 46931 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACG 46872 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| || || || || || |||||| Sbjct 46871 GCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCC 46812 Query 61244 ATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||| ||| | ||| | |||| | ||||||| || || | ||||| || ||| Sbjct 46811 TTGAAAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 46753 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| ||||| ||||| ||||||| ||||||||||| | || |||| Sbjct 46752 TACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 46693 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 |||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 46692 ACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC 46634 Query 61422 GGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | | | || | | Sbjct 46633 --CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGG--CTCCGAGT-CT 46579 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 || | || ||| | |||| ||||| || ||||| | || ||| | ||| | Sbjct 46578 TTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTC 46519 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | || || || || | ||||| || ||||| ||| ||| || Sbjct 46518 TG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 46460 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC--TATTCA 61651 | |||| || || ||||||||| |||| || || || || ||||| |||||| Sbjct 46459 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTCA 46405 >seq801 Length=188201 Score = 149 bits (164), Expect = 5e-31 Identities = 398/595 (67%), Gaps = 15/595 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 11190 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 11249 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||||| ||||||| |||| || Sbjct 11250 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACG 11309 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| || || || || || |||||| Sbjct 11310 GCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCC 11369 Query 61244 ATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||| ||| | ||| | |||| | ||||||| || || | ||||| || ||| Sbjct 11370 TTGAAAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 11428 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| ||||| ||||| ||||||| ||||||||||| | || |||| Sbjct 11429 TACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 11488 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 |||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 11489 ACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC 11547 Query 61422 GGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | | | || | | Sbjct 11548 --CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGG--CTCCGAGT-CT 11602 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 || | || ||| | |||| ||||| || ||||| | || ||| | ||| | Sbjct 11603 TTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTC 11662 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | || || || || | ||||| || ||||| ||| ||| || Sbjct 11663 TG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 11721 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC--TATTCA 61651 | |||| || || ||||||||| |||| || || || || ||||| |||||| Sbjct 11722 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTCA 11776 >seq202 Length=624202 Score = 138 bits (152), Expect = 9e-28 Identities = 411/617 (67%), Gaps = 19/617 (3%) Strand=Plus/Minus Query 61044 GAATCCTCGTCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACA 61102 ||| ||| ||| ||| |||| ||| || ||| |||| || || ||| ||||||| Sbjct 31968 GAACCCTGATCGCTTCTGTAT-GTTTCCGATCCAGTACCCAGAAATATGGGAAATGTACA 31910 Query 61103 AAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG 61162 | ||||| || || ||||||||||| | ||||||||||| | | | | ||||| Sbjct 31909 AGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCC 31850 Query 61163 ACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 | ||||| |||| ||| || || ||| | || | | || ||||| | Sbjct 31849 AGTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCG 31790 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAA 61281 | || || ||||| || ||| ||| ||| | ||| | |||| | ||||||| || Sbjct 31789 CTGCCTCCGACGGCATTGTCCTTGAAAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAG 31731 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 || | ||||| || |||||||| |||||||| ||||| ||||| ||||||| ||| Sbjct 31730 GTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAG 31671 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTT 61400 |||||||| | || |||| |||||||||| ||| | | || | | | || | || Sbjct 31670 ATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTT 31612 Query 61401 CAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 | | || ||||| || || || ||| | ||| ||| || | |||||| | | || Sbjct 31611 CCACGCGATCGACACCATCCCTTGCGTCGCGAA---GAAGGCCCAGTGGGCCCTGAGATG 31555 Query 61458 GATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 |||| | | | || | | || | || ||| | | || ||||| || ||||| Sbjct 31554 GATCGACGG--CTCCGAGT-CTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGG 31498 Query 61518 TGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | || ||| | ||| | || ||| || |||||| | || || || || | |||| Sbjct 31497 GATTTTCTTCTCGGGGAGTTTCTG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGC 31439 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 | || ||||| ||| ||| ||| |||| || || ||||||||| |||| || || || | Sbjct 31438 CGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCG 31379 Query 61637 CTGTTTTGC--TATTCA 61651 | ||||| |||||| Sbjct 31378 CGTGTTTGCTGTATTCA 31362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557427424480