Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq41 116 4e-21
seq222 91.5 2e-13
>seq41
Length=1285553
Score = 116 bits (128), Expect = 4e-21
Identities = 139/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034
|| ||||| || || || ||||| ||||| ||||||||||| | || || |||||
Sbjct 342948 CTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTTGC 343007
Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCA-ATCTTTCCT 161093
|| | || || || ||| ||| |||||| | ||| ||||| || || || | |||| ||
Sbjct 343008 TCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGCTTT-CT 343066
Query 161094 GGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153
|||||||||||| ||| |||||||| ||||||||||| |||||||| | |||||
Sbjct 343067 GGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCCGTCGTCTGA 343126
Query 161154 TGTAAC 161159
|| ||
Sbjct 343127 CGTCAC 343132
>seq222
Length=596275
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489
|| || ||||||| ||| || || | |||||||| || || ||||||||| | ||
Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828
Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549
||||| ||||| || | ||||| || || || | |||||||| |||||||| ||
Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888
Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTG 160587
|| || | || ||| | ||||||||||| ||| ||||
Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 106926
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489
|| || ||||||| ||| || || | |||||||| || || ||||||||| | ||
Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783
Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549
||||| ||||| || | ||||| || || || | |||||||| |||||||| ||
Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723
Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTG 160587
|| || | || ||| | ||||||||||| ||| ||||
Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 179685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551360961219600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |