Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq41 116 4e-21 seq222 91.5 2e-13 >seq41 Length=1285553 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 || ||||| || || || ||||| ||||| ||||||||||| | || || ||||| Sbjct 342948 CTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTTGC 343007 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCA-ATCTTTCCT 161093 || | || || || ||| ||| |||||| | ||| ||||| || || || | |||| || Sbjct 343008 TCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGCTTT-CT 343066 Query 161094 GGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153 |||||||||||| ||| |||||||| ||||||||||| |||||||| | ||||| Sbjct 343067 GGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCCGTCGTCTGA 343126 Query 161154 TGTAAC 161159 || || Sbjct 343127 CGTCAC 343132 >seq222 Length=596275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || ||||||| ||| || || | |||||||| || || ||||||||| | || Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828 Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549 ||||| ||||| || | ||||| || || || | |||||||| |||||||| || Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888 Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTG 160587 || || | || ||| | ||||||||||| ||| |||| Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 106926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || ||||||| ||| || || | |||||||| || || ||||||||| | || Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783 Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549 ||||| ||||| || | ||||| || || || | |||||||| |||||||| || Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723 Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTG 160587 || || | || ||| | ||||||||||| ||| |||| Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 179685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551360961219600