Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq157 132 5e-26 seq222 107 2e-18 seq316 87.8 2e-12 >seq157 Length=750868 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 || |||||||||||||||| ||| ||||| || || || || || ||||| |||| Sbjct 399153 CAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTTT 399212 Query 164394 TTCCT-CCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || | |||||| || ||||| || ||| | ||| | || ||||||||||| |||| | Sbjct 399213 TTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTGA 399272 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | || | |||||| | || ||||||||||||||||| ||||| ||||||| || Sbjct 399273 AGTGTAGGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTTATT 399332 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAG 164562 ||||||| |||| ||||||| ||| | || || | || ||||||| Sbjct 399333 TGAAGATAGTGATGGTGCAAATACATTCCATGC-TTTAACCCAACTCAAG 399381 >seq222 Length=596275 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 161199 GAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 161258 |||||||| || || || || || | |||||||| ||||| ||||| ||| | ||| Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828 Query 161259 TACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 161318 ||||| ||||| |||| ||||||||| || || | ||||||| ||||| ||| ||| Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888 Query 161319 AACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 || || | ||||| || ||||||||||| || Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 106920 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 161199 GAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 161258 |||||||| || || || || || | |||||||| ||||| ||||| ||| | ||| Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783 Query 161259 TACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 161318 ||||| ||||| |||| ||||||||| || || | ||||||| ||||| ||| ||| Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723 Query 161319 AACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 || || | ||||| || ||||||||||| || Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 179691 >seq316 Length=488290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 164433 CATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCT 164492 ||||||||||| ||||| | | | || | |||||| | || |||||||||| |||| Sbjct 122879 CATATGATGGGAGTTGCTAGGGTGTTGGGCGCTGCTCTGTTATGCGCTATTCATGATGCT 122820 Query 164493 ACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTC 164540 |||| ||| |||||||| |||||||||||||| ||||||| ||| Sbjct 122819 ACCGCAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACGTTC 122772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559312744328800