Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1768 78.8 2e-12 seq5567 73.4 8e-11 >seq1768 Length=251763 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 250973 GACCCGAAACCGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 250914 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 250913 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 250854 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 250853 AACCAAGATCGGATATAGCTGGT 250831 >seq5567 Length=223943 Score = 73.4 bits (80), Expect = 8e-11 Identities = 105/144 (73%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGT-GATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGG 250 ||| |||||| | || |||||| ||| ||||||||||||| || |||| | ||| Sbjct 172702 GACCCGAAAC-TGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGG 172644 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||| || | || | ||| | |||||||| | || |||||||||||||| Sbjct 172643 AGGACCGAATCGACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGC 172584 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||| ||| | | | |||||| || Sbjct 172583 CAACCAAGATCGAATATAGCTGGT 172560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972409362432